Global S&T Development Trend Analysis Platform of Resources and Environment
DOI | 10.1111/gcb.14497 |
New insights into adaptation and population structure of cork oak using genotyping by sequencing | |
Pina-Martins, Francisco1; Baptista, Joao2; Pappas, Georgios, Jr.3; Paulo, Octavio S.1 | |
2019 | |
发表期刊 | GLOBAL CHANGE BIOLOGY
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ISSN | 1354-1013 |
EISSN | 1365-2486 |
出版年 | 2019 |
卷号 | 25期号:1页码:337-350 |
文章类型 | Article |
语种 | 英语 |
国家 | Portugal; Brazil |
英文摘要 | Species respond to global climatic changes in a local context. Understanding this process, including its speed and intensity, is paramount due to the pace at which such changes are currently occurring. Tree species are particularly interesting to study in this regard due to their long generation times, sedentarism, and ecological and economic importance. Quercus suber L. is an evergreen forest tree species of the Fagaceae family with an essentially Western Mediterranean distribution. Despite frequent assessments of the species' evolutionary history, large-scale genetic studies have mostly relied on plastidial markers, whereas nuclear markers have been used on studies with locally focused sampling strategies. In this work, "Genotyping by sequencing" is used to derive 1,996 single nucleotide polymorphism markers to assess the species' evolutionary history from a nuclear DNA perspective, gain insights into how local adaptation is shaping the species' genetic background, and to forecast how Q. suber may respond to global climatic changes from a genetic perspective. Results reveal (a) an essentially unstructured species, where (b) a balance between gene flow and local adaptation keeps the species' gene pool somewhat homogeneous across its distribution, but still allowing (c) variation clines for the individuals to cope with local conditions. "Risk of Non-Adaptedness" (RONA) analyses suggest that for the considered variables and most sampled locations, (d) the cork oak should not require large shifts in allele frequencies to survive the predicted climatic changes. Future directions include integrating these results with ecological niche modeling perspectives, improving the RONA methodology, and expanding its use to other species. With the implementation presented in this work, the RONA can now also be easily assessed for other organisms. |
英文关键词 | association study genotyping by sequencing local adaptation natural selection effects Quercus suber risk of non-adaptedness West Mediterranean |
领域 | 气候变化 ; 资源环境 |
收录类别 | SCI-E |
WOS记录号 | WOS:000453370700028 |
WOS关键词 | LOCAL ADAPTATION ; QUERCUS-SUBER ; CLIMATE-CHANGE ; GENE FLOW ; ECOLOGICAL GENOMICS ; FOREST TREES ; RED OAK ; HISTORY ; L. ; SELECTION |
WOS类目 | Biodiversity Conservation ; Ecology ; Environmental Sciences |
WOS研究方向 | Biodiversity & Conservation ; Environmental Sciences & Ecology |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://119.78.100.173/C666/handle/2XK7JSWQ/16755 |
专题 | 气候变化 资源环境科学 |
作者单位 | 1.Univ Lisbon, Ctr Ecol Evolut & Environm Changes, Fac Ciencias, Computat Biol & Populat Genom Grp,Dept Biol Anim, Lisbon, Portugal; 2.Univ Aveiro, Dept Biol, CESAM, Aveiro, Portugal; 3.Univ Brasilia, Dept Cell Biol, Brasilia, DF, Brazil |
推荐引用方式 GB/T 7714 | Pina-Martins, Francisco,Baptista, Joao,Pappas, Georgios, Jr.,et al. New insights into adaptation and population structure of cork oak using genotyping by sequencing[J]. GLOBAL CHANGE BIOLOGY,2019,25(1):337-350. |
APA | Pina-Martins, Francisco,Baptista, Joao,Pappas, Georgios, Jr.,&Paulo, Octavio S..(2019).New insights into adaptation and population structure of cork oak using genotyping by sequencing.GLOBAL CHANGE BIOLOGY,25(1),337-350. |
MLA | Pina-Martins, Francisco,et al."New insights into adaptation and population structure of cork oak using genotyping by sequencing".GLOBAL CHANGE BIOLOGY 25.1(2019):337-350. |
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