GSTDTAP  > 气候变化
DOI10.1111/gcb.14497
New insights into adaptation and population structure of cork oak using genotyping by sequencing
Pina-Martins, Francisco1; Baptista, Joao2; Pappas, Georgios, Jr.3; Paulo, Octavio S.1
2019
发表期刊GLOBAL CHANGE BIOLOGY
ISSN1354-1013
EISSN1365-2486
出版年2019
卷号25期号:1页码:337-350
文章类型Article
语种英语
国家Portugal; Brazil
英文摘要

Species respond to global climatic changes in a local context. Understanding this process, including its speed and intensity, is paramount due to the pace at which such changes are currently occurring. Tree species are particularly interesting to study in this regard due to their long generation times, sedentarism, and ecological and economic importance. Quercus suber L. is an evergreen forest tree species of the Fagaceae family with an essentially Western Mediterranean distribution. Despite frequent assessments of the species' evolutionary history, large-scale genetic studies have mostly relied on plastidial markers, whereas nuclear markers have been used on studies with locally focused sampling strategies. In this work, "Genotyping by sequencing" is used to derive 1,996 single nucleotide polymorphism markers to assess the species' evolutionary history from a nuclear DNA perspective, gain insights into how local adaptation is shaping the species' genetic background, and to forecast how Q. suber may respond to global climatic changes from a genetic perspective. Results reveal (a) an essentially unstructured species, where (b) a balance between gene flow and local adaptation keeps the species' gene pool somewhat homogeneous across its distribution, but still allowing (c) variation clines for the individuals to cope with local conditions. "Risk of Non-Adaptedness" (RONA) analyses suggest that for the considered variables and most sampled locations, (d) the cork oak should not require large shifts in allele frequencies to survive the predicted climatic changes. Future directions include integrating these results with ecological niche modeling perspectives, improving the RONA methodology, and expanding its use to other species. With the implementation presented in this work, the RONA can now also be easily assessed for other organisms.


英文关键词association study genotyping by sequencing local adaptation natural selection effects Quercus suber risk of non-adaptedness West Mediterranean
领域气候变化 ; 资源环境
收录类别SCI-E
WOS记录号WOS:000453370700028
WOS关键词LOCAL ADAPTATION ; QUERCUS-SUBER ; CLIMATE-CHANGE ; GENE FLOW ; ECOLOGICAL GENOMICS ; FOREST TREES ; RED OAK ; HISTORY ; L. ; SELECTION
WOS类目Biodiversity Conservation ; Ecology ; Environmental Sciences
WOS研究方向Biodiversity & Conservation ; Environmental Sciences & Ecology
引用统计
文献类型期刊论文
条目标识符http://119.78.100.173/C666/handle/2XK7JSWQ/16755
专题气候变化
资源环境科学
作者单位1.Univ Lisbon, Ctr Ecol Evolut & Environm Changes, Fac Ciencias, Computat Biol & Populat Genom Grp,Dept Biol Anim, Lisbon, Portugal;
2.Univ Aveiro, Dept Biol, CESAM, Aveiro, Portugal;
3.Univ Brasilia, Dept Cell Biol, Brasilia, DF, Brazil
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GB/T 7714
Pina-Martins, Francisco,Baptista, Joao,Pappas, Georgios, Jr.,et al. New insights into adaptation and population structure of cork oak using genotyping by sequencing[J]. GLOBAL CHANGE BIOLOGY,2019,25(1):337-350.
APA Pina-Martins, Francisco,Baptista, Joao,Pappas, Georgios, Jr.,&Paulo, Octavio S..(2019).New insights into adaptation and population structure of cork oak using genotyping by sequencing.GLOBAL CHANGE BIOLOGY,25(1),337-350.
MLA Pina-Martins, Francisco,et al."New insights into adaptation and population structure of cork oak using genotyping by sequencing".GLOBAL CHANGE BIOLOGY 25.1(2019):337-350.
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