Global S&T Development Trend Analysis Platform of Resources and Environment
DOI | 10.1038/s41467-018-07828-0 |
Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages | |
Bunnik, Evelien M.1,2; Cook, Kate B.3; Varoquaux, Nelle4,5,6,7,8; Batugedara, Gayani2; Prudhomme, Jacques2; Cort, Anthony2; Shi, Lirong9; Andolina, Chiara10,11; Ross, Leila S.12; Brady, Declan13; Fidock, David A.12,14; Nosten, Francois10,11; Tewari, Rita13; Sinnis, Photini9; Ay, Ferhat15; Vert, Jean-Philippe6,7,8,16; Noble, William Stafford3,17; Le Roch, Karine G.2 | |
2018-05-15 | |
发表期刊 | NATURE COMMUNICATIONS
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ISSN | 2041-1723 |
出版年 | 2018 |
卷号 | 9 |
文章类型 | Article |
语种 | 英语 |
国家 | USA; France; England; Thailand |
英文摘要 | The development of malaria parasites throughout their various life cycle stages is coordinated by changes in gene expression. We previously showed that the three-dimensional organization of the Plasmodium falciparum genome is strongly associated with gene expression during its replication cycle inside red blood cells. Here, we analyze genome organization in the P. falciparum and P. vivax transmission stages. Major changes occur in the localization and interactions of genes involved in pathogenesis and immune evasion, host cell invasion, sexual differentiation, and master regulation of gene expression. Furthermore, we observe reorganization of subtelomeric heterochromatin around genes involved in host cell remodeling. Depletion of heterochromatin protein 1 (PfHP1) resulted in loss of interactions between virulence genes, confirming that PfHP1 is essential for maintenance of the repressive center. Our results suggest that the three-dimensional genome structure of human malaria parasites is strongly connected with transcriptional activity of specific gene families throughout the life cycle. |
领域 | 资源环境 |
收录类别 | SCI-E |
WOS记录号 | WOS:000432115300014 |
WOS关键词 | DIFFERENTIAL EXPRESSION ANALYSIS ; MALARIA PARASITES ; CHROMATIN INTERACTIONS ; ANTISENSE TRANSCRIPTS ; SEXUAL DEVELOPMENT ; VIRULENCE GENES ; X-CHROMOSOME ; LIFE-CYCLE ; CELL-CYCLE ; FALCIPARUM |
WOS类目 | Multidisciplinary Sciences |
WOS研究方向 | Science & Technology - Other Topics |
URL | 查看原文 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://119.78.100.173/C666/handle/2XK7JSWQ/204132 |
专题 | 资源环境科学 |
作者单位 | 1.Univ Texas Hlth Sci Ctr San Antonio, Dept Microbiol Immunol & Mol Genet, 7703 Floyd Curl Dr, San Antonio, TX 78229 USA; 2.Univ Calif Riverside, Dept Mol Cell & Syst Biol, 900 Univ Ave, Riverside, CA 92521 USA; 3.Univ Washington, Dept Genome Sci, 3720 15th Ave NE, Seattle, WA 98195 USA; 4.Univ Calif Berkeley, Dept Stat, 367 Evans Hall, Berkeley, CA 94720 USA; 5.Berkeley Inst Data Sci, 190 Doe Lib, Berkeley, CA 94720 USA; 6.PSL Res Univ, MINES ParisTech, CBIO Ctr Computat Biol, 60 Blvd St Michel, F-75006 Paris, France; 7.Inst Curie, F-75248 Paris, France; 8.INSERM, U900, F-75248 Paris, France; 9.Johns Hopkins Bloomberg Sch Publ Hlth, Dept Mol Microbiol & Immunol, 615N Wolfe St,E5132, Baltimore, MD 21205 USA; 10.Univ Oxford, Ctr Trop Med & Global Hlth, Nuffield Dept Med Res Bldg, Old Rd Campus,Roosevelt Dr, Oxford OX3 7FZ, England; 11.Mahidol Univ, Fac Trop Med, Mahidol Oxford Trop Med Res Unit, Shoklo Malaria Res Unit, Mae Sot 63110, Tak, Thailand; 12.Columbia Univ, Med Ctr, Dept Microbiol & Immunol, 701W 168 St,HHSC 1208, New York, NY 10032 USA; 13.Univ Nottingham, Sch Life Sci, Queens Med Ctr, Nottingham NG7 2UH, England; 14.Columbia Univ, Div Infect Dis, Dept Med, New York, NY 10032 USA; 15.La Jolla Inst Allergy & Immunol, 9420 Athena Cir, La Jolla, CA 92037 USA; 16.PSL Res Univ, Ecole Normale Super, CNRS, Dept Math & Applicat, F-75005 Paris, France; 17.Univ Washington, Dept Comp Sci & Engn, Seattle, WA 98195 USA |
推荐引用方式 GB/T 7714 | Bunnik, Evelien M.,Cook, Kate B.,Varoquaux, Nelle,et al. Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages[J]. NATURE COMMUNICATIONS,2018,9. |
APA | Bunnik, Evelien M..,Cook, Kate B..,Varoquaux, Nelle.,Batugedara, Gayani.,Prudhomme, Jacques.,...&Le Roch, Karine G..(2018).Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.NATURE COMMUNICATIONS,9. |
MLA | Bunnik, Evelien M.,et al."Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages".NATURE COMMUNICATIONS 9(2018). |
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