GSTDTAP  > 气候变化
DOI10.1016/j.foreco.2016.10.043
Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution
Abbosh, Christopher1; Birkbak, Nicolai J.1,2; Wilson, Gareth A.1,2; Jamal-Hanjani, Mariam1; Constantin, Tudor3; Salari, Raheleh3; Le Quesne, John4; Moore, David A.4; Veeriah, Selvaraju1; Rosenthal, Rachel1; Marafioti, Teresa1,5; Kirkizlar, Eser3; Watkins, Thomas B. K.1,2; McGranahan, Nicholas1,2; Ward, Sophia1,2,6; Martinson, Luke4; Riley, Joan4; Fraioli, Francesco7; Al Bakir, Maise2; Gronroos, Eva2; Zambrana, Francisco1; Endozo, Raymondo7; Bi, Wenya Linda8,9; Fennessy, Fiona M.8,9; Sponer, Nicole3; Johnson, Diana1; Laycock, Joanne1; Shafi, Seema1; Czyzewska-Khan, Justyna1; Rowan, Andrew2; Chambers, Tim2,6; Matthews, Nik6,10; Turajlic, Samra2,11,12; Hiley, Crispin1,2; Lee, Siow Ming1,13; Forster, Martin D.1,13; Ahmad, Tanya13; Falzon, Mary5; Borg, Elaine5; Lawrence, David14; Hayward, Martin14; Kolvekar, Shyam14; Panagiotopoulos, Nikolaos14; Janes, Sam M.1,15,16; Thakrar, Ricky15; Ahmed, Asia17; Blackhall, Fiona18,19; Summers, Yvonne19; Hafez, Dina3; Naik, Ashwini3; Ganguly, Apratim3; Kareht, Stephanie3; Shah, Rajesh20; Joseph, Leena21; Quinn, Anne Marie21; Crosbie, Phil A.22; Naidu, Babu23,63,64; Middleton, Gary24; Langman, Gerald25; Trotter, Simon25; Nicolson, Marianne26,27; Remmen, Hardy28,29; Kerr, Keith29,30; Chetty, Mahendran27,31; Gomersall, Lesley27,32; Fennell, Dean A.4; Nakas, Apostolos33; Rathinam, Sridhar33; Anand, Girija34; Khan, Sajid35,36,37; Russell, Peter38; Ezhil, Veni39; Ismail, Babikir40; Irvin-Sellers, Melanie41; Prakash, Vineet42; Lester, Jason F.43; Kornaszewska, Malgorzata44; Attanoos, Richard45,46; Adams, Haydn47; Davies, Helen48; Oukrif, Dahmane1; Akarca, Ayse U.1; Hartley, John A.49; Lowe, Helen L.49; Lock, Sara50; Iles, Natasha51; Bell, Harriet51; Ngai, Yenting51; Elgar, Greg2,6; Szallasi, Zoltan52,53,54; Schwarz, Roland F.55; Herrero, Javier56; Stewart, Aengus57; Quezada, Sergio A.58; Peggs, Karl S.58,87; Van Loo, Peter59,60; Dive, Caroline1,61; Lin, C. Jimmy3; Rabinowitz, Matthew3; Aerts, Hugo J. W. L.8,9,62; Hackshaw, Allan51; Shaw, Jacqui A.4; Zimmermann, Bernhard G.3; Swanton, Charles1,2; Jamal-Hanjani, Mariam1; Abbosh, Christopher1; Veeriah, Selvaraju1; Shafi, Seema1; Czyzewska-Khan, Justyna1; Johnson, Diana1; Laycock, Joanne1; Bosshard-Carter, Leticia1; Goh, Gerald1; Rosenthal, Rachel1; Gorman, Pat1; Murugaesu, Nirupa1; Hynds, Robert E.1,16; Wilson, Gareth A.1,2; Birkbak, Nicolai J.1,2; Watkins, Thomas B. K.1,2; McGranahan, Nicholas1,2; Horswell, Stuart2; Al Bakir, Maise2; Gronroos, Eva2; Mitter, Richard2; Escudero, Mickael2; Stewart, Aengus57; Van Loo, Peter59,60; Rowan, Andrew2; Xu, Hang2; Turajlic, Samra2,11,12; Hiley, Crispin1,2; Goldman, Jacki2; Stone, Richard Kevin2; Denner, Tamara2; Matthews, Nik6,10; Elgar, Greg2,6; Ward, Sophia1,2,6; Biggs, Jennifer2,6; Costa, Marta2; Begum, Sharmin2; Phillimore, Ben2; Chambers, Tim2,6; Nye, Emma2; Graca, Sofia2; Joshi, Kroopa1; Furness, Andrew1; Ben Aissa, Assma1; Wong, Yien Ning Sophia1; Georgiou, Andy1; Quezada, Sergio A.58; Peggs, Karl S.58,87; Hartley, John A.49; Lowe, Helen L.49; Herrero, Javier56; Lawrence, David14; Hayward, Martin14; Panagiotopoulos, Nikolaos14; Kolvekar, Shyam14; Falzon, Mary5; Borg, Elaine5; Marafioti, Teresa5; Simeon, Celia63,64; Hector, Gemma63,64; Smith, Amy63,64; Aranda, Marie63,64; Novelli, Marco5; Oukrif, Dahmane1; Akarca, Ayse U.1; Janes, Sam M.1,15,16; Thakrar, Ricky15; Forster, Martin D.1,13; Ahmad, Tanya13; Lee, Siow Ming1,13; Papadatos-Pastos, Dionysis13; Carnell, Dawn63,64; Mendes, Ruheena63,64; George, Jeremy63,64; Navani, Neal63,64; Ahmed, Asia17; Taylor, Magali63,64; Choudhary, Junaid63,64; Summers, Yvonne19; Califano, Raffaele65; Taylor, Paul65; Shah, Rajesh20; Krysiak, Piotr65; Rammohan, Kendadai65; Fontaine, Eustace65; Booton, Richard65; Evison, Matthew65; Crosbie, Phil A.22; Moss, Stuart65; Idries, Faiza65; Joseph, Leena21; Bishop, Paul65; Chaturvedi, Anshuman65; Quinn, Anne Marie21; Doran, Helen65; Leek, Angela66; Harrison, Phil66; Moore, Katrina66; Waddington, Rachael66; Novasio, Juliette66; Blackhall, Fiona18,19; Rogan, Jane66; Smith, Elaine65; Dive, Caroline1,61; Tugwood, Jonathan61; Brady, Ged61; Rothwell, Dominic G.61; Chemi, Francesca61; Pierce, Jackie61; Gulati, Sakshi61; Naidu, Babu23; Langman, Gerald25; Trotter, Simon25; Bellamy, Mary67; Bancroft, Hollie67; Kerr, Amy67; Kadiri, Salma67; Webb, Joanne67; Middleton, Gary24; Djearaman, Madava67; Fennell, Dean A.4; Shaw, Jacqui A.4; Le Quesne, John4; Moore, David A.4; Thomas, Anne4; Walter, Harriet4; Riley, Joan4; Martinson, Luke4; Nakas, Apostolos33; Rathinam, Sridhar33; Monteiro, William68; Marshall, Hilary68; Nelson, Louise69; Bennett, Jonathan69; Primrose, Lindsay69; Anand, Girija34; Khan, Sajid35,36,37; Amadi, Anita70,71; Nicolson, Marianne26,27; Kerr, Keith29,30; Palmer, Shirley27; Remmen, Hardy28,29; Miller, Joy27; Buchan, Keith27; Chetty, Mahendran27,31; Gomersall, Lesley27,32; Lester, Jason F.43; Edwards, Alison72; Morgan, Fiona73; Adams, Haydn47; Davies, Helen73; Kornaszewska, Malgorzata44; Attanoos, Richard45,46; Lock, Sara50; Verjee, Azmina50; MacKenzie, Mairead74; Wilcox, Maggie74; Bell, Harriet51; Iles, Natasha51; Hackshaw, Allan51; Ngai, Yenting51; Smith, Sean51; Gower, Nicole51; Ottensmeier, Christian75,76; Chee, Serena75,76; Johnson, Benjamin75,76; Alzetani, Aiman75,76; Shaw, Emily75,76; Lim, Eric77; De Sousa, Paulo77; Barbosa, Monica Tavares77; Bowman, Alex77; Jordan, Simon77; Rice, Alexandra77; Raubenheimer, Hilgardt77; Proli, Chiara77; Cufari, Maria Elena77; Ronquillo, John Carlo77; Kwayie, Angela77; Bhayani, Harshil77; Hamilton, Morag77; Bakar, Yusura77; Mensah, Natalie77; Ambrose, Lyn77; Devaraj, Anand77; Buderi, Silviu77; Finch, Jonathan77; Azcarate, Leire77; Chavan, Hema77; Green, Sophie77; Mashinga, Hillaria77; Nicholson, Andrew G.77,78; Lau, Kelvin79; Sheaff, Michael79; Schmid, Peter79; Conibear, John79; Ezhil, Veni39; Ismail, Babikir40; Irvin-Sellers, Melanie41; Prakash, Vineet42; Russell, Peter38; Light, Teresa80; Horey, Tracey80; Danson, Sarah81; Bury, Jonathan81; Edwards, John81; Hill, Jennifer81; Matthews, Sue81; Kitsanta, Yota81; Suvarna, Kim81; Fisher, Patricia81; Keerio, Allah Dino81; Shackcloth, Michael82; Gosney, John82; Postmus, Pieter82; Feeney, Sarah82; Asante-Siaw, Julius82; Constantin, Tudor3; Salari, Raheleh3; Sponer, Nicole3; Naik, Ashwini3; Zimmermann, Bernhard G.3; Rabinowitz, Matthew3; Aerts, Hugo J. W. L.8,9,62; Dentro, Stefan83; Dessimoz, Christophe84,85,86
2017-05-25
发表期刊NATURE
ISSN0028-0836
EISSN1476-4687
出版年2017
卷号545期号:7655页码:446-+
文章类型Article
语种英语
国家England; USA; Scotland; Wales; Denmark; Hungary; Germany; Belgium; Switzerland
英文摘要

The early detection of relapse following primary surgery for non-small-cell lung cancer and the characterization of emerging subclones, which seed metastatic sites, might offer new therapeutic approaches for limiting tumour recurrence. The ability to track the evolutionary dynamics of early-stage lung cancer non-invasively in circulating tumour DNA (ctDNA) has not yet been demonstrated. Here we use a tumour-specific phylogenetic approach to profile the ctDNA of the first 100 TRACERx (Tracking Non-Small-Cell Lung Cancer Evolution Through Therapy (Rx)) study participants, including one patient who was also recruited to the PEACE (Posthumous Evaluation of Advanced Cancer Environment) post-mortem study. We identify independent predictors of ctDNA release and analyse the tumour-volume detection limit. Through blinded profiling of postoperative plasma, we observe evidence of adjuvant chemotherapy resistance and identify patients who are very likely to experience recurrence of their lung cancer. Finally, we show that phylogenetic ctDNA profiling tracks the subclonal nature of lung cancer relapse and metastasis, providing a new approach for ctDNA-driven therapeutic studies.


领域地球科学 ; 气候变化 ; 资源环境
收录类别SCI-E
WOS记录号WOS:000401906500045
WOS关键词CIRCULATING TUMOR DNA ; UPTAKE RATIO ; MUTATIONS ; IMPACT
WOS类目Multidisciplinary Sciences
WOS研究方向Science & Technology - Other Topics
引用统计
文献类型期刊论文
条目标识符http://119.78.100.173/C666/handle/2XK7JSWQ/22884
专题气候变化
作者单位1.UCL, Canc Inst, Canc Res UK Lung Canc Ctr Excellence London & Man, Paul OGorman Bldg,72 Huntley St, London WC1E 6DD, England;
2.Francis Crick Inst, Translat Canc Therapeut Lab, 1 Midland Rd, London NW1 1AT, England;
3.Natera Inc, 201 Ind Rd, San Carlos, CA 94070 USA;
4.Univ Leicester, Canc Studies, Leicester LE2 7LX, Leics, England;
5.Univ Coll London Hosp, Dept Pathol, 21 Univ St, London WC1 6JJ, England;
6.Francis Crick Inst, Adv Sequencing Facil, 1 Midland Rd, London NW1 1AT, England;
7.Univ Coll London Hosp, Dept Nucl Med, 235 Euston Rd, London NW1 2BU, England;
8.Brigham & Womens Hosp, 75 Francis St, Boston, MA 02115 USA;
9.Harvard Med Sch, Boston, MA 02115 USA;
10.Inst Canc Res, Tumour Profiling Unit, Genom Facil, 237 Fulham Rd, London SW3 6JB, England;
11.Royal Marsden Hosp, Renal Unit, London SW3, England;
12.Royal Marsden Hosp, Skin Unit, London SW3, England;
13.Univ Coll London Hosp, Dept Oncol, 250 Euston Rd, London NW1 2BU, England;
14.Univ Coll London Hosp, Dept Cardiothorac Surg, 235 Euston Rd, London NW1 2BU, England;
15.Univ Coll London Hosp, Dept Resp Med, 235 Euston Rd, London NW1 2BU, England;
16.UCL, Div Med, Lungs Living Res Ctr, UCL Resp, Rayne Bldg,5 Univ St, London WC1E 6JF, England;
17.Univ Coll London Hosp, Dept Radiol, 235 Euston Rd, London NW1 2BU, England;
18.Univ Manchester, Inst Canc Studies, Oxford Rd, Manchester M13 9PL, Lancs, England;
19.Christie Hosp, Manchester M20 4BX, Lancs, England;
20.Univ Hosp South Manchester, Dept Cardiothorac Surg, Manchester M23 9LT, Lancs, England;
21.Univ Hosp South Manchester, Dept Pathol, Manchester M23 9LT, Lancs, England;
22.Univ Hosp South Manchester, North West Lung Ctr, Manchester M23 9LT, Lancs, England;
23.Birmingham Heartlands Hosp, Dept Thorac Surg, Birmingham B9 5SS, W Midlands, England;
24.Univ Birmingham, Inst Immunol & Immunotherapy, Birmingham B15 2TT, W Midlands, England;
25.Birmingham Heartlands Hosp, Dept Cellular Pathol, Birmingham B9 5SS, W Midlands, England;
26.Univ Aberdeen, Dept Med Oncol, Med Sch, Aberdeen AB25 2ZN, Scotland;
27.Aberdeen Royal Infirm, Aberdeen AB25 2ZN, Scotland;
28.Univ Aberdeen, Dept Cardiothorac Surg, Med Sch, Aberdeen AB25 2ZD, Scotland;
29.Aberdeen Royal Infirm, Aberdeen AB25 2ZD, Scotland;
30.Univ Aberdeen, Dept Pathol, Med Sch, Aberdeen AB25 2ZD, Scotland;
31.Univ Aberdeen, Dept Resp Med, Med Sch, Aberdeen AB25 2ZN, Scotland;
32.Univ Aberdeen, Dept Radiol, Med Sch, Aberdeen AB25 2ZN, Scotland;
33.Glenfield Hosp, Dept Thorac Surg, Leicester LE3 9QP, Leics, England;
34.North Middlesex Univ Hosp, Dept Radiotherapy, London N18, England;
35.Royal Free Hosp, Dept Resp Med, Pond St, London NW3 2QG, England;
36.Barnet Hosp, Dept Resp Med, Wellhouse Lane, Barnet EN5 3DJ, England;
37.Chase Farm Hosp, Dept Resp Med, Wellhouse Lane, Barnet EN5 3DJ, England;
38.Princess Alexandra Hosp, Dept Resp Med, Hamstel Rd, Harlow CM20 1QX, Essex, England;
39.Royal Surrey Cty Hosp, St Lukes Canc Ctr, Dept Clin Oncol, Guildford GU2 7XX, Surrey, England;
40.Ashford & St Peters Hosp, Dept Pathol, Guildford Rd, Chertsey KT16 0PZ, Surrey, England;
41.Ashford & St Peters Hosp, Dept Resp Med, Guildford Rd, Chertsey KT16 0PZ, Surrey, England;
42.Ashford & St Peters Hosp, Dept Radiol, Guildford Rd, Chertsey KT16 0PZ, Surrey, England;
43.Velindre Hosp, Dept Clin Oncol, Cardiff CF14 2TL, S Glam, Wales;
44.Univ Hosp Wales, Dept Cardiothorac Surg, Cardiff CF14 4XW, S Glam, Wales;
45.Univ Hosp Wales, Dept Cellular Pathol, Heath Pk, Cardiff, S Glam, Wales;
46.Cardiff Univ, Heath Pk, Cardiff, S Glam, Wales;
47.Univ Hosp Llandough, Dept Radiol, Cardiff CF64 2XX, S Glam, Wales;
48.Univ Hosp Llandough, Dept Resp Med, Cardiff CF64 2XX, S Glam, Wales;
49.UCL, Expt Canc Med Ctr, GCLP Facil, Canc Inst, Paul OGorman Bldg,72 Huntley St, London WC1E 6DD, England;
50.Whittington Hosp NHS Trust, Dept Resp Med, London N19 5NF, England;
51.UCL, Canc Res UK & UCL Canc Trials Ctr, London W1T 4TJ, England;
52.Tech Univ Denmark, Dept Syst Biol, Ctr Biol Sequence Anal, DK-2800 Lyngby, Denmark;
53.Harvard Med Sch, Boston Childrens Hosp, Computat Hlth Informat Program CHIP, Boston, MA USA;
54.Semmelweis Univ, Dept Pathol 2, Brain Metastasis Res Grp, MTA SE NAP, H-1091 Budapest, Hungary;
55.Max Delbrueck Ctr Mol Med, Berlin Inst Med Syst Biol, Berlin, Germany;
56.UCL, Bill Lyons Informat Ctr, Canc Inst, Paul OGorman Bldg,72 Huntley St, London WC1E 6DD, England;
57.Francis Crick Inst, Dept Bioinformat & Biostat, 1 Midland Rd, London NW1 1AT, England;
58.UCL, Canc Immunol Unit, Canc Inst, Paul OGorman Bldg,72 Huntley St, London WC1E 6DD, England;
59.Francis Crick Inst, Canc Genom Lab, 1 Midland Rd, London NW1 1AT, England;
60.Univ Leuven, Dept Human Genet, B-3000 Leuven, Belgium;
61.Univ Manchester, Canc Res UK Manchester Inst, Wilmslow Rd, Manchester M20 4BX, Lancs, England;
62.Dana Farber Canc Inst, 450 Brookline Ave, Boston, MA 02215 USA;
63.Univ Birmingham, Inst Inflammat & Ageing, Birmingham B15 2TT, W Midlands, England;
64.Univ Coll London Hosp NHS Fdn Trust, London, England;
65.Univ Hosp South Manchester, Manchester M23 9LT, Lancs, England;
66.Univ Manchester, Manchester Canc Res Ctr Biobank, Wilmslow Rd, Manchester M20 4BX, Lancs, England;
67.Heart England NHS Fdn Trust, Birmingham, W Midlands, England;
68.Glenfield Hosp, NIHR Leicester Resp Biomed Res Unit, Groby Rd, Leicester LE3 9QP, Leics, England;
69.Univ Hosp Leicester NHS Trust, Leicester, Leics, England;
70.Barnet Hosp, Wellhouse Lane, Barnet EN5 3DJ, England;
71.Chase Farm Hosp, Wellhouse Lane, Barnet EN5 3DJ, England;
72.Velindre Canc Ctr, Clin Trials Unit, Cardiff CF14 2TL, S Glam, Wales;
73.Cardiff & Vale Univ Hlth Board, Cardiff, S Glam, Wales;
74.Independent Canc Patients Voice, 17 Woodbridge St, London EC1R 0LL, England;
75.Univ Southampton, Southampton, Hants, England;
76.Southampton Univ Hosp, Southampton, Hants, England;
77.Royal Brompton & Harefield NHS Fdn Trust, London, England;
78.Imperial Coll, Natl Heart & Lung Inst, Sydney St, London, England;
79.Barts Hlth NHS Trust, London, England;
80.Princess Alexandra Hosp NHS Trust, Harlow, Essex, England;
81.Sheffield Teaching Hosp NHS Fdn Trust, Sheffield, S Yorkshire, England;
82.Liverpool Heart & Chest Hosp NHS Fdn Trust, Liverpool, Merseyside, England;
83.Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England;
84.UCL, Dept Comp Sci, Bioinformat Grp, London, England;
85.Univ Lausanne, CH-1015 Lausanne, Switzerland;
86.SIB Swiss Inst Bioinformat, CH-1015 Lausanne, Switzerland;
87.UCL, Canc Inst, Res Dept Haematol, London WC1E 6DD, England
推荐引用方式
GB/T 7714
Abbosh, Christopher,Birkbak, Nicolai J.,Wilson, Gareth A.,et al. Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution[J]. NATURE,2017,545(7655):446-+.
APA Abbosh, Christopher.,Birkbak, Nicolai J..,Wilson, Gareth A..,Jamal-Hanjani, Mariam.,Constantin, Tudor.,...&Dessimoz, Christophe.(2017).Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution.NATURE,545(7655),446-+.
MLA Abbosh, Christopher,et al."Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution".NATURE 545.7655(2017):446-+.
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