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Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function 期刊论文
NATURE, 2020, 580 (7805) : 669-+
作者:  Kanarek, Naama;  Petrova, Boryana;  Sabatini, David M.
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/03

Cryo-electron microscopy structures of the DNA-binding domains of the pioneer transcription factor SOX2 and its close homologue SOX11 elucidate the role of these factors in initiating chromatin opening and nucleosome remodelling.


'  Pioneer'  transcription factors are required for stem-cell pluripotency, cell differentiation and cell reprogramming(1,2). Pioneer factors can bind nucleosomal DNA to enable gene expression from regions of the genome with closed chromatin. SOX2 is a prominent pioneer factor that is essential for pluripotency and self-renewal of embryonic stem cells(3). Here we report cryo-electron microscopy structures of the DNA-binding domains of SOX2 and its close homologue SOX11 bound to nucleosomes. The structures show that SOX factors can bind and locally distort DNA at superhelical location 2. The factors also facilitate detachment of terminal nucleosomal DNA from the histone octamer, which increases DNA accessibility. SOX-factor binding to the nucleosome can also lead to a repositioning of the N-terminal tail of histone H4 that includes residue lysine 16. We speculate that this repositioning is incompatible with higher-order nucleosome stacking, which involves contacts of the H4 tail with a neighbouring nucleosome. Our results indicate that pioneer transcription factors can use binding energy to initiate chromatin opening, and thereby facilitate nucleosome remodelling and subsequent transcription.


  
Lipid availability determines fate of skeletal progenitor cells via SOX9 期刊论文
NATURE, 2020
作者:  Obata, Yuuki;  Castano, Alvaro;  Boeing, Stefan;  Bon-Frauches, Ana Carina;  Fung, Candice;  Fallesen, Todd;  De Aguero, Mercedes Gomez;  Yilmaz, Bahtiyar;  Lopes, Rita;  Huseynova, Almaz;  Horswell, Stuart;  Maradana, Muralidhara Rao;  Boesmans, Werend;  Vanden Berghe, Pieter;  Murray, Andrew J.;  Stockinger, Brigitta;  Macpherson, Andrew J.;  Pachnis, Vassilis
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/03

Lipid starvation results in skeletal progenitors favouring commitment to chondrogenic over osteogenic fate, a process mediated by FOXO transcription factors and SOX9.


The avascular nature of cartilage makes it a unique tissue(1-4), but whether and how the absence of nutrient supply regulates chondrogenesis remain unknown. Here we show that obstruction of vascular invasion during bone healing favours chondrogenic over osteogenic differentiation of skeletal progenitor cells. Unexpectedly, this process is driven by a decreased availability of extracellular lipids. When lipids are scarce, skeletal progenitors activate forkhead box O (FOXO) transcription factors, which bind to the Sox9 promoter and increase its expression. Besides initiating chondrogenesis, SOX9 acts as a regulator of cellular metabolism by suppressing oxidation of fatty acids, and thus adapts the cells to an avascular life. Our results define lipid scarcity as an important determinant of chondrogenic commitment, reveal a role for FOXO transcription factors during lipid starvation, and identify SOX9 as a critical metabolic mediator. These data highlight the importance of the nutritional microenvironment in the specification of skeletal cell fate.


  
An evaluation of European nitrogen and sulfur wet deposition and their trends estimated by six chemistry transport models for the period 1990-2010 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (1) : 379-405
作者:  Theobald, Mark R.;  39;Isidoro, Massimo
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
Integrative functional genomic analysis of human brain development and neuropsychiatric risks 期刊论文
SCIENCE, 2018, 362 (6420) : 1264-+
作者:  Li, Mingfeng;  39;Donovan, Michael C.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
Cancer origins-genetics rules the day 期刊论文
SCIENCE, 2018, 362 (6410) : 30-31
作者:  Kareta, Michael S.;  Sage, Julien
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27
Sex reversal following deletion of a single distal enhancer of Sox9 期刊论文
SCIENCE, 2018, 360 (6396) : 1469-1473
作者:  Gonen, Nitzan;  Futtner, Chris R.;  Wood, Sophie;  Garcia-Moreno, S. Alexandra;  Salamone, Isabella M.;  Samson, Shiela C.;  Sekido, Ryohei;  Poulat, Francis;  Maatouk, Danielle M.;  Lovell-Badge, Robin
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Modeling approach for emissions reduction of primary PM2.5 and secondary PM2.5 precursors to achieve the air quality target 期刊论文
ATMOSPHERIC RESEARCH, 2017, 192: 43787
作者:  Chen, Tu-Fu;  Chang, Ken-Hui;  Tsai, Chang-You
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
Fine particulate matter  Air quality standard  Emission reduction  Air quality modeling  
Translation from unconventional 5 ' start sites drives tumour initiation 期刊论文
NATURE, 2017, 541 (7638) : 494-499
作者:  Sendoel, Ataman;  Dunn, Joshua G.;  Rodriguez, Edwin H.;  Naik, Shruti;  Gomez, Nicholas C.;  Hurwitz, Brian;  Levorse, John;  Dill, Brian D.;  Schramek, Daniel;  Molina, Henrik;  Weissman, Jonathan S.;  Fuchs, Elaine
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
SOX2 promotes lineage plasticity and antiandrogen resistance in TP53-and RB1-deficient prostate cancer 期刊论文
SCIENCE, 2017, 355 (6320) : 84-88
作者:  Mu, Ping;  Zhang, Zeda;  Benelli, Matteo;  Karthaus, Wouter R.;  Hoover, Elizabeth;  Chen, Chi-Chao;  Wongvipat, John;  Ku, Sheng-Yu;  Gao, Dong;  Cao, Zhen;  Shah, Neel;  Adams, Elizabeth J.;  Abida, Wassim;  Watson, Philip A.;  Prandi, Davide;  Huang, Chun-Hao;  de Stanchina, Elisa;  Lowe, Scott W.;  Ellis, Leigh;  Beltran, Himisha;  Rubin, Mark A.;  Goodrich, David W.;  Demichelis, Francesca;  Sawyers, Charles L.
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Rb1 and Trp53 cooperate to suppress prostate cancer lineage plasticity, metastasis, and antiandrogen resistance 期刊论文
SCIENCE, 2017, 355 (6320) : 78-83
作者:  Ku, Sheng Yu;  Rosario, Spencer;  Wang, Yanqing;  Mu, Ping;  Seshadri, Mukund;  Goodrich, Zachary W.;  Goodrich, Maxwell M.;  Labbe, David P.;  Gomez, Eduardo Cortes;  Wang, Jianmin;  Long, Henry W.;  Xu, Bo;  Brown, Myles;  Loda, Massimo;  Sawyers, Charles L.;  Ellis, Leigh;  Goodrich, David W.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27