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Sustainability of agricultural basin development under uncertain future climate and economic conditions: A socio-hydrological analysis 期刊论文
ECOLOGICAL ECONOMICS, 2020, 174
作者:  Roobavannan, M.;  Kandasamy, J.;  Pande, S.;  Vigneswaran, S.;  Sivapalan, M.
收藏  |  浏览/下载:11/0  |  提交时间:2020/05/13
Socio-hydrology  Sustainable development  Values and preferences  Future projections  Safe operating space  
Technical comment on Condamine et al. (2019): a cautionary note for users of linear diversification dependencies 期刊论文
ECOLOGY LETTERS, 2020, 23 (7) : 1169-1171
作者:  Gamisch, Alexander
收藏  |  浏览/下载:2/0  |  提交时间:2020/05/20
Absolute values  dependency  diversification  linear  misinterpretation  negative rates  RPANDA  
The mutational landscape of normal human endometrial epithelium 期刊论文
NATURE, 2020, 580 (7805) : 640-+
作者:  Rogelj, Joeri;  Forster, Piers M.;  Kriegler, Elmar;  Smith, Christopher J.;  Seferian, Roland
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

All normal somatic cells are thought to acquire mutations, but understanding of the rates, patterns, causes and consequences of somatic mutations in normal cells is limited. The uterine endometrium adopts multiple physiological states over a lifetime and is lined by a gland-forming epithelium(1,2). Here, using whole-genome sequencing, we show that normal human endometrial glands are clonal cell populations with total mutation burdens that increase at about 29 base substitutions per year and that are many-fold lower than those of endometrial cancers. Normal endometrial glands frequently carry '  driver'  mutations in cancer genes, the burden of which increases with age and decreases with parity. Cell clones with drivers often originate during the first decades of life and subsequently progressively colonize the epithelial lining of the endometrium. Our results show that mutational landscapes differ markedly between normal tissues-perhaps shaped by differences in their structure and physiology-and indicate that the procession of neoplastic change that leads to endometrial cancer is initiated early in life.


Whole-genome sequencing of normal human endometrial glands shows that most are clonal cell populations and frequently carry cancer driver mutations that occur early in life, and that parity has a protective effect.


  
Extant timetrees are consistent with a myriad of diversification histories 期刊论文
NATURE, 2020, 580 (7804) : 502-+
作者:  Bhaskar, M. K.;  Riedinger, R.;  Machielse, B.;  Levonian, D. S.;  Nguyen, C. T.;  Knall, E. N.;  Park, H.;  Englund, D.;  Loncar, M.;  Sukachev, D. D.;  Lukin, M. D.
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/03

An infinite number of alternative diversification scenarios-which may have markedly different, but equally plausible, dynamics-can underpin a given time-calibrated phylogeny of extant species, suggesting many previous studies have over-interpreted phylogenetic evidence.


Time-calibrated phylogenies of extant species (referred to here as '  extant timetrees'  ) are widely used for estimating diversification dynamics(1). However, there has been considerable debate surrounding the reliability of these inferences(2-5) and, to date, this critical question remains unresolved. Here we clarify the precise information that can be extracted from extant timetrees under the generalized birth-death model, which underlies most existing methods of estimation. We prove that, for any diversification scenario, there exists an infinite number of alternative diversification scenarios that are equally likely to have generated any given extant timetree. These '  congruent'  scenarios cannot possibly be distinguished using extant timetrees alone, even in the presence of infinite data. Importantly, congruent diversification scenarios can exhibit markedly different and yet similarly plausible dynamics, which suggests that many previous studies may have over-interpreted phylogenetic evidence. We introduce identifiable and easily interpretable variables that contain all available information about past diversification dynamics, and demonstrate that these can be estimated from extant timetrees. We suggest that measuring and modelling these identifiable variables offers a more robust way to study historical diversification dynamics. Our findings also make it clear that palaeontological data will continue to be crucial for answering some macroevolutionary questions.


  
Socially optimal forest management and biodiversity conservation in temperate forests under climate change 期刊论文
ECOLOGICAL ECONOMICS, 2020, 169
作者:  Augustynczik, Andrey Lessa Derci;  Gutsch, Martin;  Basile, Marco;  Suckow, Felicitas;  Lasch, Petra;  Yousefpour, Rasoul;  Hanewinkel, Marc
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/02
Forest biodiversity  Ecosystem services  Forest planning  Climate change  Optimal taxation  
Angiosperm speciation cools down in the tropics 期刊论文
ECOLOGY LETTERS, 2020, 23 (4) : 692-700
作者:  Igea, Javier;  Tanentzap, Andrew J.
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/02
angiosperms  biodiversity  biogeography  latitudinal diversity gradient  macroevolution  speciation  
The origins of acoustic communication in vertebrates 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Chen, Zhuo;  Wiens, John J.
收藏  |  浏览/下载:5/0  |  提交时间:2020/05/13
Building mountain biodiversity: Geological and evolutionary processes 期刊论文
SCIENCE, 2019, 365 (6458) : 1114-+
作者:  Rahbek, Carsten;  Borregaard, Michael K.;  Antonelli, Alexandre;  Colwell, Robert K.;  Holt, Ben G.;  Nogues-Bravo, David;  Rasmussen, Christian M. O.;  Richardson, Katherine;  Rosing, Minik T.;  Whittaker, Robert J.;  Fjeldsa, Jon
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Assessing the causes of diversification slowdowns: temperature-dependent and diversity-dependent models receive equivalent support 期刊论文
ECOLOGY LETTERS, 2019, 22 (11) : 1900-1912
作者:  Condamine, Fabien L.;  Rolland, Jonathan;  Morlon, Helene
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Birth-death models  climate change  ecological limits  macroevolution  metabolic theory of biodiversity  paleoclimate  speciation  tetrapods  
The Early Origin of Feathers 期刊论文
TRENDS IN ECOLOGY & EVOLUTION, 2019, 34 (9) : 856-869
作者:  Benton, Michael J.;  Dhouailly, Danielle;  Jiang, Baoyu;  McNamara, Maria
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27