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Oncotarget: Epithelial-mesenchymal transitions create endothelial cells and tumor growth 新闻
来源平台:EurekAlert. 发布日期:2021
作者:  admin
收藏  |  浏览/下载:0/0  |  提交时间:2021/07/26
Sensing what plants sense: Integrated framework helps scientists explain biology and predict crop performance 新闻
来源平台:EurekAlert. 发布日期:2021
作者:  admin
收藏  |  浏览/下载:0/0  |  提交时间:2021/06/09
How New Zealand's cheeky kea and kākā will fare with climate change 新闻
来源平台:EurekAlert. 发布日期:2021
作者:  admin
收藏  |  浏览/下载:0/0  |  提交时间:2021/06/07
Researchers seek deeper understanding on how cells in the body operate 新闻
来源平台:EurekAlert. 发布日期:2021
作者:  admin
收藏  |  浏览/下载:2/0  |  提交时间:2021/06/07
Patterns in crop data reveal new insight about plants and their environments 新闻
来源平台:EurekAlert. 发布日期:2020
作者:  admin
收藏  |  浏览/下载:0/0  |  提交时间:2020/05/28
Past is prologue: Genetic 'memory' of ancestral environments helps organisms readapt 新闻
来源平台:EurekAlert. 发布日期:2020
作者:  admin
收藏  |  浏览/下载:4/0  |  提交时间:2020/05/26
The strength and pattern of natural selection on gene expression in rice 期刊论文
NATURE, 2020, 578 (7796) : 572-+
作者:  Lipson, Mark;  Ribot, Isabelle;  Mallick, Swapan;  Rohland, Nadin;  Olalde, Inigo;  Adamski, Nicole;  Broomandkhoshbacht, Nasreen;  Lawson, Ann Marie;  Lopez, Saioa;  Oppenheimer, Jonas;  Stewardson, Kristin
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/03

Levels of gene expression underpin organismal phenotypes(1,2), but the nature of selection that acts on gene expression and its role in adaptive evolution remain unknown(1,2). Here we assayed gene expression in rice (Oryza sativa)(3), and used phenotypic selection analysis to estimate the type and strength of selection on the levels of more than 15,000 transcripts(4,5). Variation in most transcripts appears (nearly) neutral or under very weak stabilizing selection in wet paddy conditions (with median standardized selection differentials near zero), but selection is stronger under drought conditions. Overall, more transcripts are conditionally neutral (2.83%) than are antagonistically pleiotropic(6) (0.04%), and transcripts that display lower levels of expression and stochastic noise(7-9) and higher levels of plasticity(9) are under stronger selection. Selection strength was further weakly negatively associated with levels of cis-regulation and network connectivity(9). Our multivariate analysis suggests that selection acts on the expression of photosynthesis genes(4,5), but that the efficacy of selection is genetically constrained under drought conditions(10). Drought selected for earlier flowering(11,12) and a higher expression of OsMADS18 (Os07g0605200), which encodes a MADS-box transcription factor and is a known regulator of early flowering(13)-marking this gene as a drought-escape gene(11,12). The ability to estimate selection strengths provides insights into how selection can shape molecular traits at the core of gene action.


Phenotypic selection analysis is used to estimate the type and strength of selection that acts on more than 15,000 transcripts in rice (Oryza sativa), which provides insight into the adaptive evolutionary role of selection on gene expression.


  
TGF-beta orchestrates fibrogenic and developmental EMTs via the RAS effector RREB1 期刊论文
NATURE, 2020, 577 (7791) : 566-+
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/03

Epithelial-to-mesenchymal transitions (EMTs) are phenotypic plasticity processes that confer migratory and invasive properties to epithelial cells during development, wound-healing, fibrosis and cancer(1-4). EMTs are driven by SNAIL, ZEB and TWIST transcription factors(5,6) together with microRNAs that balance this regulatory network(7,8). Transforming growth factor beta (TGF-beta) is a potent inducer of developmental and fibrogenic EMTs4,9,10. Aberrant TGF-beta signalling and EMT are implicated in the pathogenesis of renal fibrosis, alcoholic liver disease, non-alcoholic steatohepatitis, pulmonary fibrosis and cancer(4,11). TGF-beta depends on RAS and mitogen-activated protein kinase (MAPK) pathway inputs for the induction of EMTs12-19. Here we show how these signals coordinately trigger EMTs and integrate them with broader pathophysiological processes. We identify RAS-responsive element binding protein 1 (RREB1), a RAS transcriptional effector(20,21), as a key partner of TGF-beta-activated SMAD transcription factors in EMT. MAPK-activated RREB1 recruits TGF-beta-activated SMAD factors to SNAIL. Context-dependent chromatin accessibility dictates the ability of RREB1 and SMAD to activate additional genes that determine the nature of the resulting EMT. In carcinoma cells, TGF-beta-SMAD and RREB1 directly drive expression of SNAIL and fibrogenic factors stimulating myofibroblasts, promoting intratumoral fibrosis and supporting tumour growth. In mouse epiblast progenitors, Nodal-SMAD and RREB1 combine to induce expression of SNAIL and mesendoderm-differentiation genes that drive gastrulation. Thus, RREB1 provides a molecular link between RAS and TGF-beta pathways for coordinated induction of developmental and fibrogenic EMTs. These insights increase our understanding of the regulation of epithelial plasticity and its pathophysiological consequences in development, fibrosis and cancer.


RAS and TGF-beta pathways regulate distinct modes of epithelial-to-mesenchymal transition via RAS-responsive element binding protein 1.


  
The histone demethylase KDM6B regulates temperature-dependent sex determination in a turtle species 期刊论文
SCIENCE, 2018, 360 (6389) : 645-648
作者:  Ge, Chutian;  Ye, Jian;  Weber, Ceri;  Sun, Wei;  Zhang, Haiyan;  Zhou, Yingjie;  Cai, Cheng;  Qian, Guoying;  Capel, Blanche
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Basal resistance enhances warming tolerance of alien over indigenous species across latitude 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (1) : 145-150
作者:  Janion-Scheepers, Charlene;  Phillips, Laura;  Sgro, Carla M.;  Duffy, Grant A.;  Hallas, Rebecca;  Chown, Steven L.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
climate change  introduced species  soil fauna  thermal limits  laboratory evolution