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Origin of complexity in haemoglobin evolution 期刊论文
NATURE, 2020
作者:  Cheema, Suraj S.;  Kwon, Daewoong;  Shanker, Nirmaan;  dos Reis, Roberto;  Hsu, Shang-Lin;  Xiao, Jun;  Zhang, Haigang;  Wagner, Ryan;  Datar, Adhiraj;  McCarter, Margaret R.;  Serrao, Claudy R.;  Yadav, Ajay K.;  Karbasian, Golnaz;  Hsu, Cheng-Hsiang;  Tan, Ava J.;  Wang, Li-Chen;  Thakare, Vishal;  Zhang, Xiang;  Mehta, Apurva;  Karapetrova, Evguenia;  Chopdekar, Rajesh, V;  Shafer, Padraic;  Arenholz, Elke;  Hu, Chenming;  Proksch, Roger;  Ramesh, Ramamoorthy;  Ciston, Jim;  Salahuddin, Sayeef
收藏  |  浏览/下载:50/0  |  提交时间:2020/07/03

Most proteins associate into multimeric complexes with specific architectures(1,2), which often have functional properties such as cooperative ligand binding or allosteric regulation(3). No detailed knowledge is available about how any multimer and its functions arose during evolution. Here we use ancestral protein reconstruction and biophysical assays to elucidate the origins of vertebrate haemoglobin, a heterotetramer of paralogous alpha- and beta-subunits that mediates respiratory oxygen transport and exchange by cooperatively binding oxygen with moderate affinity. We show that modern haemoglobin evolved from an ancient monomer and characterize the historical '  missing link'  through which the modern tetramer evolved-a noncooperative homodimer with high oxygen affinity that existed before the gene duplication that generated distinct alpha- and beta-subunits. Reintroducing just two post-duplication historical substitutions into the ancestral protein is sufficient to cause strong tetramerization by creating favourable contacts with more ancient residues on the opposing subunit. These surface substitutions markedly reduce oxygen affinity and even confer cooperativity, because an ancient linkage between the oxygen binding site and the multimerization interface was already an intrinsic feature of the protein'  s structure. Our findings establish that evolution can produce new complex molecular structures and functions via simple genetic mechanisms that recruit existing biophysical features into higher-level architectures.


Experimental analysis of reconstructed ancestral globins reveals that haemoglobin'  s complex tetrameric structure and oxygen-binding functions evolved by simple genetic and biophysical mechanisms.


  
Sensitivity of Meteorological Skill to Selection of WRF-Chem Physical Parameterizations and Impact on Ozone Prediction During the Lake Michigan Ozone Study (LMOS) 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2020, 125 (5)
作者:  Abdi-Oskouei, M.;  Carmichael, G.;  Christiansen, M.;  Ferrada, G.;  Roozitalab, B.;  Sobhani, N.;  Wade, K.;  Czarnetzki, A.;  Pierce, R. B.;  Wagner, T.;  Stanier, C.
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/02
Charting two centuries of transformation in a coastal social-ecological system: A mixed methods approach 期刊论文
GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS, 2020, 61
作者:  Thurstan, Ruth H.;  Diggles, Ben K.;  Gillies, Chris L.;  Strong, Michael K.;  Kerkhove, Ray;  Buckley, Sarah M.;  King, Robert A.;  Smythe, Vince;  Heller-Wagner, Gideon;  Weeks, Rebecca;  Palin, Fred;  McLeod, Ian
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/02
Cultural history  Environmental history  Historical ecology  Moreton Bay  Oyster  Shifting baseline syndrome  
Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Kitzinger, Katharina;  Marchant, Hannah K.;  Bristow, Laura A.;  Herbold, Craig W.;  Padilla, Cory C.;  Kidane, Abiel T.;  Littmann, Sten;  Daims, Holger;  Pjevac, Petra;  Stewart, Frank J.;  Wagner, Michael;  Kuypers, Marcel M. M.
收藏  |  浏览/下载:7/0  |  提交时间:2020/05/13
A giant exoplanet orbiting a very-low-mass star challenges planet formation models 期刊论文
SCIENCE, 2019, 365 (6460) : 1441-+
作者:  Morales, J. C.;  Mustill, A. J.;  Ribas, I.;  Davies, M. B.;  Reiners, A.;  Bauers, F. F.;  Kossakowski, D.;  Herrero, E.;  Rodriguez, E.;  Lopez-Gonzalez, M. J.;  Rodriguez-Lopez, C.;  Bejar, V. J. S.;  Gonzalez-Cuesta, L.;  Luque, R.;  Palle, E.;  Perger, M.;  Baroch, D.;  Johansen, A.;  Klahr, H.;  Mordasini, C.;  Anglada-Escude, G.;  Caballero, J. A.;  Cortes-Contreras, M.;  Dreizler, S.;  Lafarga, M.;  Nagel, E.;  Passegger, V. M.;  Reffert, S.;  Rosich, A.;  Schweitzer, A.;  Tal-Or, L.;  Trifonov, T.;  Zechmeister, M.;  Quirrenbach, A.;  Amado, P. J.;  Guenther, E. W.;  Hagen, H. -J.;  Henning, T.;  Jeffers, S. V.;  Kaminski, A.;  Kuester, M.;  Montes, D.;  Seifert, W.;  Abellan, F. J.;  Abril, M.;  Aceituno, J.;  Aceituno, F. J.;  Alonso-Floriano, F. J.;  Ammler-von Eiff, M.;  Antona, R.;  Arroyo-Torres, B.;  Azzaro, M.;  Barrado, D.;  Becerril-Jarque, S.;  Benitez, D.;  Berdinas, Z. M.;  Bergond, G.;  Brinkmoller, M.;  del Burgo, C.;  Burn, R.;  Calvo-Ortega, R.;  Cano, J.;  Cardenas, M. C.;  Cardona Guillen, C.;  Carro, J.;  Casa, E.;  Casanova, V.;  Casasayas-Barris, N.;  Chaturvedi, P.;  Cifuentes, C.;  Claret, A.;  Colome, J.;  Czesla, S.;  Diez-Alonso, E.;  Dorda, R.;  Emsenhuber, A.;  Fernandez, M.;  Fernandez-Martin, A.;  Ferro, I. M.;  Fuhrmeister, B.;  Galadi-Enriquez, D.;  Gallardo Cava, I.;  Garcia Vargas, M. L.;  Garcia-Piquer, A.;  Gesa, L.;  Gonzalez-Alvarez, E.;  Gonzalez Hernandez, J. I.;  Gonzalez-Peinado, R.;  Guardia, J.;  Guijarro, A.;  de Guindos, E.;  Hatzes, A. P.;  Hauschildt, P. H.;  Hedrosa, R. P.;  Hermelo, I.;  Hernandez Arabi, R.;  Hernandez Otero, F.;  Hintz, D.;  Holgado, G.;  Huber, A.;  Huke, P.;  Johnson, E. N.;  de Juan, E.;  Kehr, M.;  Kemmer, J.;  Kim, M.;  Klueter, J.;  Klutsch, A.;  Labarga, F.;  Labiche, N.;  Lalitha, S.;  Lampon, M.;  Lara, L. M.;  Launhardt, R.;  Lazaro, F. J.;  Lizon, J. -L.;  Llamas, M.;  Lodieu, N.;  Lopez del Fresno, M.;  Lopez Salas, . F.;  Lopez-Santiago, J.;  Magan Madinabeitia, H.;  Mall, U.;  Mancini, L.;  Mandel, H.;  Marfil, E.;  Marin Molina, J. . A.;  Martin, E. L.;  Martin-Fernandez, P.;  Martin-Ruiz, S.;  Martinez-Rodriguez, H.;  Marvin, C. J.;  Mirabet, E.;  Moya, A.;  Naranjo, V.;  Nelson, R. P.;  Nortmann, L.;  Nowak, G.;  Ofir, A.;  Pascua, J.;  Pavlov, A.;  Pedraz, S.;  Perez Medialdea, D.;  Perez-Calpena, A.;  Perryman, M. A. C.;  Rabaza, O.;  Ramon Ballesta, A.;  Rebolo, R.;  Redondo, P.;  Rix, H. -W.;  Rodler, F.;  Rodriguez Trinidad, A.;  Sabotta, S.;  Sadegi, S.;  Salz, M.;  Sanchez-Blanco, E.;  Sanchez Carrasco, M. A.;  Sanchez-Lopez, A.;  Sanz-Forcada, J.;  Sarkis, P.;  Sarmiento, L. F.;  Schafer, S.;  Schlecker, M.;  Schmitt, J. H. M. M.;  Schofer, P.;  Solano, E.;  Sota, A.;  Stahl, O.;  Stock, S.;  Stuber, T.;  Sturmer, J.;  Suarez, J. C.;  Tabernero, H. M.;  Tulloch, S. M.;  Veredas, G.;  Vico-Linares, J. I.;  Vilardell, F.;  Wagner, K.;  Winkler, J.;  Wolthoff, V.;  Yan, F.;  Zapatero Osorio, M. R.
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Images from the surface of asteroid Ryugu show rocks similar to carbonaceous chondrite meteorites 期刊论文
SCIENCE, 2019, 365 (6455) : 817-+
作者:  Jaumann, R.;  Schmitz, N.;  Ho, T. -M.;  Schroder, S. E.;  Otto, K. A.;  Stephan, K.;  Elgner, S.;  Krohn, K.;  Preusker, F.;  Scholten, F.;  Biele, J.;  Ulamec, S.;  Krause, C.;  Sugita, S.;  Matz, K. -D.;  Roatsch, T.;  Parekh, R.;  Mottola, S.;  Grott, M.;  Michel, P.;  Trauthan, F.;  Koncz, A.;  Michaelis, H.;  Lange, C.;  Grundmann, J. T.;  Maibaum, M.;  Sasaki, K.;  Wolff, F.;  Reill, J.;  Moussi-Soffys, A.;  Lorda, L.;  Neumann, W.;  Vincent, J. -B.;  Wagner, R.;  Bibring, J. -P.;  Kameda, S.;  Yano, H.;  Watanabe, S.;  Yoshikawa, M.;  Tsuda, Y.;  Okada, T.;  Yoshimitsu, T.;  Mimasu, Y.;  Saiki, T.;  Yabuta, H.;  Rauer, H.;  Honda, R.;  Morota, T.;  Yokota, Y.;  Kouyama, T.
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (4) : 1514-1528
作者:  Ware, Ian M.;  Van Nuland, Michael E.;  Schweitzer, Jennifer A.;  Yang, Zamin;  Schadt, Christopher W.;  Sidak-Loftis, Lindsay C.;  Stone, Nathan E.;  Busch, Joseph D.;  Wagner, David M.;  Bailey, Joseph K.
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
climate  ecosystem dynamics  genetic divergence  intraspecific variation  phenology  Populus  
Tree-level growth and survival following commercial thinning of four major softwood species in North America 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 427: 355-364
作者:  Bose, Arun K.;  Weiskittel, Aaron;  Kuehne, Christian;  Wagner, Robert G.;  Turnblom, Eric;  Burkhart, Harold E.
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
Individual-tree growth  Tree mortality  Softwood species  Shade tolerance  Tree spacing  Mixed-effect modeling  Pacific Northwest US  Southeast US  Northeast US  
Ring-Mold Craters on Ceres: Evidence for Shallow Subsurface Water Ice Sources 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2018, 45 (16) : 8121-8128
作者:  Krohn, K.;  Neesemann, A.;  Jaumann, R.;  Otto, K. A.;  Stephan, K.;  Wagner, R. J.;  Tosi, F.;  Zambon, F.;  Ruesch, O.;  Williams, D. A.;  Raymond, C. A.;  Russell, C. T.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Does commercial thinning improve stand-level growth of the three most commercially important softwood forest types in North America? 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 409: 683-693
作者:  Bose, Arun K.;  Weiskittel, Aaron;  Kuehne, Christian;  Wagner, Robert G.;  Turnblom, Eric;  Burkhart, Harold E.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Commercial thinning  Softwood species  Dominant trees  Stand age at thinning  Mixed-effect modelling  Pacific Northwest US  Southeast US  Northeast US