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Origin of complexity in haemoglobin evolution 期刊论文
NATURE, 2020
作者:  Cheema, Suraj S.;  Kwon, Daewoong;  Shanker, Nirmaan;  dos Reis, Roberto;  Hsu, Shang-Lin;  Xiao, Jun;  Zhang, Haigang;  Wagner, Ryan;  Datar, Adhiraj;  McCarter, Margaret R.;  Serrao, Claudy R.;  Yadav, Ajay K.;  Karbasian, Golnaz;  Hsu, Cheng-Hsiang;  Tan, Ava J.;  Wang, Li-Chen;  Thakare, Vishal;  Zhang, Xiang;  Mehta, Apurva;  Karapetrova, Evguenia;  Chopdekar, Rajesh, V;  Shafer, Padraic;  Arenholz, Elke;  Hu, Chenming;  Proksch, Roger;  Ramesh, Ramamoorthy;  Ciston, Jim;  Salahuddin, Sayeef
收藏  |  浏览/下载:50/0  |  提交时间:2020/07/03

Most proteins associate into multimeric complexes with specific architectures(1,2), which often have functional properties such as cooperative ligand binding or allosteric regulation(3). No detailed knowledge is available about how any multimer and its functions arose during evolution. Here we use ancestral protein reconstruction and biophysical assays to elucidate the origins of vertebrate haemoglobin, a heterotetramer of paralogous alpha- and beta-subunits that mediates respiratory oxygen transport and exchange by cooperatively binding oxygen with moderate affinity. We show that modern haemoglobin evolved from an ancient monomer and characterize the historical '  missing link'  through which the modern tetramer evolved-a noncooperative homodimer with high oxygen affinity that existed before the gene duplication that generated distinct alpha- and beta-subunits. Reintroducing just two post-duplication historical substitutions into the ancestral protein is sufficient to cause strong tetramerization by creating favourable contacts with more ancient residues on the opposing subunit. These surface substitutions markedly reduce oxygen affinity and even confer cooperativity, because an ancient linkage between the oxygen binding site and the multimerization interface was already an intrinsic feature of the protein'  s structure. Our findings establish that evolution can produce new complex molecular structures and functions via simple genetic mechanisms that recruit existing biophysical features into higher-level architectures.


Experimental analysis of reconstructed ancestral globins reveals that haemoglobin'  s complex tetrameric structure and oxygen-binding functions evolved by simple genetic and biophysical mechanisms.


  
Observation Constrained Aromatic Emissions in Shanghai, China 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2020, 125 (6)
作者:  Wang, Hongli;  Yan, Rusha;  Xu, Tingting;  Wang, Yuhang;  Wang, Qian;  Zhang, Tianqi;  An, Jingyu;  Huang, Cheng;  Gao, Yaqin;  Gao, Yang;  Li, Xiang;  Yu, Chao;  Jing, Shengao;  Qiao, Liping;  Lou, Shengrong;  Tao, Shikang;  Li, Yingjie
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/02
aromatics  observation-constrained  emissions  Shanghai  
Ligand-induced monoubiquitination of BIK1 regulates plant immunity 期刊论文
NATURE, 2020, 581 (7807) : 199-+
作者:  Shao, Wei;  Yang, Jiajun;  He, Ming;  Yu, Xiang-Yu;  Lee, Choong Heon;  Yang, Zhaohui;  Joyner, Alexandra L.;  Anderson, Kathryn V.;  Zhang, Jiangyang;  Tsou, Meng-Fu Bryan;  Shi, Hang;  Shi, Song-Hai
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

Recognition of microbe-associated molecular patterns (MAMPs) by pattern recognition receptors (PRRs) triggers the first line of inducible defence against invading pathogens(1-3). Receptor-like cytoplasmic kinases (RLCKs) are convergent regulators that associate with multiple PRRs in plants(4). The mechanisms that underlie the activation of RLCKs are unclear. Here we show that when MAMPs are detected, the RLCK BOTRYTIS-INDUCED KINASE 1 (BIK1) is monoubiquitinated following phosphorylation, then released from the flagellin receptor FLAGELLIN SENSING 2 (FLS2)-BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED KINASE 1 (BAK1) complex, and internalized dynamically into endocytic compartments. The Arabidopsis E3 ubiquitin ligases RING-H2 FINGER A3A (RHA3A) and RHA3B mediate the monoubiquitination of BIK1, which is essential for the subsequent release of BIK1 from the FLS2-BAK1 complex and activation of immune signalling. Ligand-induced monoubiquitination and endosomal puncta of BIK1 exhibit spatial and temporal dynamics that are distinct from those of the PRR FLS2. Our study reveals the intertwined regulation of PRR-RLCK complex activation by protein phosphorylation and ubiquitination, and shows that ligand-induced monoubiquitination contributes to the release of BIK1 family RLCKs from the PRR complex and activation of PRR signalling.


  
Two Dimensional Full-Wave Modeling of Propagation of Low-Altitude Hiss in the Ionosphere 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (4)
作者:  Xu, Xiang;  Zhou, Chen;  Chen, Lunjin;  Xia, Zhiyang;  Liu, Xu;  Simpson, Jamesina J.;  Zhang, Yuannong
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/02
Distinct Formation and Evolution Characteristics of Outer Radiation Belt Electron Butterfly Pitch Angle Distributions Observed by Van Allen Probes 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (4)
作者:  Ni, Binbin;  Yan, Ling;  Fu, Song;  Gu, Xudong;  Cao, Xing;  Zheng, Xiang;  Zhang, Yuannong
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/02
Enhanced Tropical Cyclone Intensity in the Western North Pacific During Warm Periods Over the Last Two Millennia 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (15) : 9145-9153
作者:  Zhou, Xin;  Liu, Zhonghui;  Yan, Qing;  Zhang, Xiaolin;  Yi, Liang;  Yang, Wenqing;  Xiang, Rong;  He, Yuxin;  Hu, Bangqi;  Liu, Yi;  Shen, Yanan
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Observational Evidence for Throat Aurora Being Associated With Magnetopause Reconnection 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (13) : 7113-7120
作者:  Han, De-Sheng;  Xu, Tong;  Jin, Yaqi;  Oksavik, K.;  Chen, Xiang-Cai;  Liu, Jian-Jun;  Zhang, Qinghe;  Baddeley, Lisa;  Herlingshaw, Katie
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Improving the North American multi-model ensemble (NMME) precipitation forecasts at local areas using wavelet and machine learning 期刊论文
CLIMATE DYNAMICS, 2019, 53: 601-615
作者:  Xu, Lei;  Chen, Nengcheng;  Zhang, Xiang;  Chen, Zeqiang;  Hu, Chuli;  Wang, Chao
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
NMME  Precipitation forecast  Bias correction  Wavelet  Machine learning  
Statistical Properties of Hiss in Plasmaspheric Plumes and Associated Scattering Losses of Radiation Belt Electrons 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (11) : 5670-5680
作者:  Zhang, Wenxun;  Ni, Binbin;  Huang, He;  Summers, Danny;  Fu, Song;  Xiang, Zheng;  Gu, Xudong;  Cao, Xing;  Lou, Yuequn;  Hua, Man
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/26
plasmaspheric plumes  plume hiss  electron scattering  
Stable Casimir equilibria and quantum trapping 期刊论文
SCIENCE, 2019, 364 (6444) : 984-+
作者:  Zhao, Rongkuo;  Li, Lin;  Yang, Sui;  Bao, Wei;  Xia, Yang;  Ashby, Paul;  Wang, Yuan;  Zhang, Xiang
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27