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Mechanisms and therapeutic implications of hypermutation in gliomas 期刊论文
NATURE, 2020, 580 (7804) : 517-+
作者:  Feng, Kaibo;  Quevedo, Raundi E.;  Kohrt, Jeffrey T.;  Oderinde, Martins S.;  Reilly, Usa;  White, M. Christina
收藏  |  浏览/下载:27/0  |  提交时间:2020/07/03

A high tumour mutational burden (hypermutation) is observed in some gliomas(1-5)  however, the mechanisms by which hypermutation develops and whether it predicts the response to immunotherapy are poorly understood. Here we comprehensively analyse the molecular determinants of mutational burden and signatures in 10,294 gliomas. We delineate two main pathways to hypermutation: a de novo pathway associated with constitutional defects in DNA polymerase and mismatch repair (MMR) genes, and a more common post-treatment pathway, associated with acquired resistance driven by MMR defects in chemotherapy-sensitive gliomas that recur after treatment with the chemotherapy drug temozolomide. Experimentally, the mutational signature of post-treatment hypermutated gliomas was recapitulated by temozolomide-induced damage in cells with MMR deficiency. MMR-deficient gliomas were characterized by a lack of prominent T cell infiltrates, extensive intratumoral heterogeneity, poor patient survival and a low rate of response to PD-1 blockade. Moreover, although bulk analyses did not detect microsatellite instability in MMR-deficient gliomas, single-cell whole-genome sequencing analysis of post-treatment hypermutated glioma cells identified microsatellite mutations. These results show that chemotherapy can drive the acquisition of hypermutated populations without promoting a response to PD-1 blockade and supports the diagnostic use of mutational burden and signatures in cancer.


Temozolomide therapy seems to lead to mismatch repair deficiency and hypermutation in gliomas, but not to an increase in response to immunotherapy.


  
Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis 期刊论文
NATURE, 2020, 578 (7796) : 577-+
作者:  Bogomilov, M.;  Tsenov, R.;  Vankova-Kirilova, G.;  Song, Y. P.;  Tang, J. Y.;  Li, Z. H.;  Bertoni, R.;  Bonesini, M.;  Chignoli, F.;  Mazza, R.;  Palladino, V;  de Bari, A.;  Orestano, D.;  Tortora, L.;  Kuno, Y.;  Sakamoto, H.;  Sato, A.;  Ishimoto, S.;  Chung, M.;  Sung, C. K.;  Filthaut, F.;  Jokovic, D.;  Maletic, D.;  Savic, M.;  Jovancevic, N.;  Nikolov, J.;  Vretenar, M.;  Ramberger, S.;  Asfandiyarov, R.;  Blondel, A.;  Drielsma, F.;  Karadzhov, Y.;  Boyd, S.;  Greis, J. R.;  Lord, T.;  Pidcott, C.;  Taylor, I;  Charnley, G.;  Collomb, N.;  Dumbell, K.;  Gallagher, A.;  Grant, A.;  Griffiths, S.;  Hartnett, T.;  Martlew, B.;  Moss, A.;  Muir, A.;  Mullacrane, I;  Oates, A.;  Owens, P.;  Stokes, G.;  Warburton, P.;  White, C.;  Adams, D.;  Bayliss, V;  Boehm, J.;  Bradshaw, T. W.;  Brown, C.;  Courthold, M.;  Govans, J.;  Hills, M.;  Lagrange, J-B;  Macwaters, C.;  Nichols, A.;  Preece, R.;  Ricciardi, S.;  Rogers, C.;  Stanley, T.;  Tarrant, J.;  Tucker, M.;  Watson, S.;  Wilson, A.;  Bayes, R.;  Nugent, J. C.;  Soler, F. J. P.;  Chatzitheodoridis, G. T.;  Dick, A. J.;  Ronald, K.;  Whyte, C. G.;  Young, A. R.;  Gamet, R.;  Cooke, P.;  Blackmore, V. J.;  Colling, D.;  Dobbs, A.;  Dornan, P.;  Franchini, P.;  Hunt, C.;  Jurj, P. B.;  Kurup, A.;  Long, K.;  Martyniak, J.;  Middleton, S.;  Pasternak, J.;  Uchida, M. A.;  Cobb, J. H.;  Booth, C. N.;  Hodgson, P.;  Langlands, J.;  Overton, E.;  Pec, V;  Smith, P. J.;  Wilbur, S.;  Ellis, M.;  Gardener, R. B. S.;  Kyberd, P.;  Nebrensky, J. J.;  DeMello, A.;  Gourlay, S.;  Lambert, A.;  Li, D.;  Luo, T.;  Prestemon, S.;  Virostek, S.;  Palmer, M.;  Witte, H.;  Adey, D.;  Bross, A. D.;  Bowring, D.;  Liu, A.;  Neuffer, D.;  Popovic, M.;  Rubinov, P.;  Freemire, B.;  Hanlet, P.;  Kaplan, D. M.;  Mohayai, T. A.;  Rajaram, D.;  Snopok, P.;  Torun, Y.;  Cremaldi, L. M.;  Sanders, D. A.;  Summers, D. J.;  Coney, L. R.;  Hanson, G. G.;  Heidt, C.
收藏  |  浏览/下载:35/0  |  提交时间:2020/07/03

Hydrogen peroxide (H2O2) is a major reactive oxygen species in unicellular and multicellular organisms, and is produced extracellularly in response to external stresses and internal cues(1-4). H2O2 enters cells through aquaporin membrane proteins and covalently modifies cytoplasmic proteins to regulate signalling and cellular processes. However, whether sensors for H2O2 also exist on the cell surface remains unknown. In plant cells, H2O2 triggers an influx of Ca2+ ions, which is thought to be involved in H2O2 sensing and signalling. Here, by using forward genetic screens based on Ca2+ imaging, we isolated hydrogen-peroxide-induced Ca(2+)increases (hpca) mutants in Arabidopsis, and identified HPCA1 as a leucine-rich-repeat receptor kinase belonging to a previously uncharacterized subfamily that features two extra pairs of cysteine residues in the extracellular domain. HPCA1 is localized to the plasma membrane and is activated by H2O2 via covalent modification of extracellular cysteine residues, which leads to autophosphorylation of HPCA1. HPCA1 mediates H2O2-induced activation of Ca2+ channels in guard cells and is required for stomatal closure. Our findings help to identify how the perception of extracellular H2O2 is integrated with responses to various external stresses and internal cues in plants, and have implications for the design of crops with enhanced fitness.


HPCA1, a member of a previously uncharacterized subfamily of leucine-rich-repeat receptor-like kinases, is the hydrogen-peroxide sensor at the plasma membrane in Arabidopsis.


  
Processive extrusion of polypeptide loops by a Hsp100 disaggregase (vol 74, pg 212, 2020) 期刊论文
NATURE, 2020
作者:  McBrien, Julia Bergild;  Mavigner, Maud;  Franchitti, Lavinia;  Smith, S. Abigail;  White, Erick;  Tharp, Gregory K.;  Walum, Hasse;  Busman-Suhay, Kathleen;  Aguilera-Sandoval, Christian R.;  Thayer, William O.;  Spagnuolo, Rae Ann;  Kovarova, Martina;  Wahl, Angela;  Cervasi, Barbara;  Margolis, David M.;  Vanderford, Thomas H.;  Carnathan, Diane G.;  Paiardini, Mirko;  Lifson, Jeffrey D.;  Lee, John H.;  Safrit, Jeffrey T.;  Bosinger, Steven E.;  Estes, Jacob D.;  Derdeyn, Cynthia A.;  Garcia, J. Victor;  Kulpa, Deanna A.;  Chahroudi, Ann;  Silvestri, Guido
收藏  |  浏览/下载:22/0  |  提交时间:2020/07/03
Kilauea lava fuels phytoplankton bloom in the North Pacific Ocean 期刊论文
SCIENCE, 2019, 365 (6457) : 1040-+
作者:  Wilson, Samuel T.;  Hawco, Nicholas J.;  Armbrust, E. Virginia;  Barone, Benedetto;  Bjorkman, Karin M.;  Boysen, Angela K.;  Burgos, Macarena;  Burrell, Timothy J.;  Casey, John R.;  DeLong, Edward F.;  Dugenne, Mathilde;  Dutkiewicz, Stephanie;  Dyhrman, Sonya T.;  Ferron, Sara;  Follows, Michael J.;  Foreman, Rhea K.;  Funkey, Carolina P.;  Harke, Matthew J.;  Henke, Britt A.;  Hill, Christopher N.;  Hynes, Annette M.;  Ingalls, Anitra E.;  Jahn, Oliver;  Kelly, Rachel L.;  Knapp, Angela N.;  Letelier, Ricardo M.;  Ribalet, Francois;  Shimabukuro, Eric M.;  Tabata, Ryan K. S.;  Turk-Kubo, Kendra A.;  White, Angelicque E.;  Zehr, Jonathan P.;  John, Seth;  Karl, David M.
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27
Decline of giant impacts on Mars by 4.48 billion years ago and an early opportunity for habitability 期刊论文
NATURE GEOSCIENCE, 2019, 12 (7) : 522-+
作者:  Moser, D. E.;  Arcuri, G. A.;  Reinhard, D. A.;  White, L. F.;  Darling, J. R.;  Barker, I. R.;  Larson, D. J.;  Irving, A. J.;  McCubbin, F. M.;  Tait, K. T.;  Roszjar, J.;  Wittmann, A.;  Davis, C.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Initial results from the New Horizons exploration of 2014 MU69, a small Kuiper Belt object 期刊论文
SCIENCE, 2019, 364 (6441) : 649-+
作者:  Stern, S. A.;  Weaver, H. A.;  Spencer, J. R.;  Olkin, C. B.;  Gladstone, G. R.;  Grundy, W. M.;  Moore, J. M.;  Cruikshank, D. P.;  Elliott, H. A.;  McKinnon, W. B.;  Parker, J. Wm.;  Verbiscer, A. J.;  Young, L. A.;  Aguilar, D. A.;  Albers, J. M.;  Andert, T.;  Andrews, J. P.;  Bagenal, F.;  Banks, M. E.;  Bauer, B. A.;  Bauman, J. A.;  Bechtold, K. E.;  Beddingfield, C. B.;  Behrooz, N.;  Beisser, K. B.;  Benecchi, S. D.;  Bernardoni, E.;  Beyer, R. A.;  Bhaskaran, S.;  Bierson, C. J.;  Binzel, R. P.;  Birath, E. M.;  Bird, M. K.;  Boone, D. R.;  Bowman, A. F.;  Bray, V. J.;  Britt, D. T.;  Brown, L. E.;  Buckley, M. R.;  Buie, M. W.;  Buratti, B. J.;  Burke, L. M.;  Bushman, S. S.;  Careich, B.;  Chaikin, A. L.;  Chavez, C. L.;  Cheng, A. F.;  Colwell, E. J.;  Conard, S. J.;  Conner, M. P.;  Conrad, C. A.;  Cook, J. C.;  Cooper, S. B.;  Custodio, O. S.;  Ore, C. M. Dalle;  Deboy, C. C.;  Dharmavaram, P.;  Dhingra, R. D.;  Dunn, G. F.;  Earle, A. M.;  Egan, A. F.;  Eisig, J.;  El-Maarry, M. R.;  Engelbrecht, C.;  Enke, B. L.;  Ercol, C. J.;  Fattig, E. D.;  Ferrell, C. L.;  Finley, T. J.;  Firer, J.;  Fischetti, J.;  Folkner, W. M.;  Fosbury, M. N.;  Fountain, G. H.;  Freeze, J. M.;  Gabasova, L.;  Glaze, L. S.;  Green, J. L.;  Griffith, G. A.;  Guo, Y.;  Hahn, M.;  Hals, D. W.;  Hamilton, D. P.;  Hamilton, S. A.;  Hanley, J. J.;  Harch, A.;  Harmon, K. A.;  Hart, H. M.;  Hayes, J.;  Hersman, C. B.;  Hill, M. E.;  Hill, T. A.;  Hofgartner, J. D.;  Holdridge, M. E.;  Horanyi, M.;  Hosadurga, A.;  Howard, A. D.;  Howett, C. J. A.;  Jaskulek, S. E.;  Jennings, D. E.;  Jensen, J. R.;  Jones, M. R.;  Kang, H. K.;  Katz, D. J.;  Kaufmann, D. E.;  Kavelaars, J. J.;  Keane, J. T.;  Keleher, G. P.;  Kinczyk, M.;  Kochte, M. C.;  Kolmnann, P.;  Krimigis, S. M.;  Kruizinga, G. L.;  Kusnierkiewicz, D. Y.;  Lahr, M. S.;  Lauer, T. R.;  Lawrence, G. B.;  Lee, J. E.;  Lessac-Chenen, E. J.;  Linscott, I. R.;  Lisse, C. M.;  Lunsford, A. W.;  Mages, D. M.;  Mallder, V. A.;  Martin, N. P.;  May, B. H.;  McComas, D. J.;  MeNutt, R. L., Jr.;  Mehoke, D. S.;  Mehoke, T. S.;  Nelson, D. S.;  Nguyen, H. D.;  Nunez, J. I.;  Ocampo, A. C.;  Owen, W. M.;  Oxton, G. K.;  Parker, A. H.;  Patzold, M.;  Pelgrift, J. Y.;  Pelletier, F. J.;  Pineau, J. P.;  Piquette, M. R.;  Porter, S. B.;  Protopapa, S.;  Quirico, E.;  Redfern, J. A.;  Regiec, A. L.;  Reitsema, H. J.;  Reuter, D. C.;  Richardson, D. C.;  Riedel, J. E.;  Ritterbush, M. A.;  Robbins, S. J.;  Rodgers, D. J.;  Rogers, G. D.;  Rose, D. M.;  Rosendal, P. E.;  Runyon, K. D.;  Ryschkewitsch, M. G.;  Saina, M. M.;  Salinas, M. J.;  Schenk, P. M.;  Scherrer, J. R.;  Schlei, W. R.;  Schmitt, B.;  Schultz, D. J.;  Schurr, D. C.;  Scipioni, F.;  Sepan, R. L.;  Shelton, R. G.;  Showalter, M. R.;  Simon, M.;  Singer, K. N.;  Stahlheber, E. W.;  Stanbridge, D. R.;  Stansberry, J. A.;  Steffi, A. J.;  Strobel, D. F.;  Stothoff, M. M.;  Stryk, T.;  Stuart, J. M.;  Summers, M. E.;  Tapley, M. B.;  Taylor, A.;  Taylor, H. W.;  Tedford, R. M.;  Throop, H. B.;  Turner, L. S.;  Umurhan, O. M.;  Van Eck, J.;  Velez, D.;  Versteeg, M. H.;  Vincent, M. A.;  Webbert, R. W.;  Weidner, S. E.;  Ii, G. E. Weigle;  Wendel, J. R.;  White, O. L.;  Whittenburg, K. E.;  Williams, B. G.;  Williams, K. E.;  Williams, S. P.;  Wimters, H. L.;  Zangari, A. M.;  Zurbuchen, T. H.
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27
Consent insufficient for data release Response 期刊论文
SCIENCE, 2019, 364 (6439) : 446-446
作者:  Amann, Rudolf I.;  Baichoo, Shakuntala;  Blencowe, Benjamin J.;  Bork, Peer;  Borodovsky, Mark;  Brooksbank, Cath;  Chain, Patrick S. G.;  Colwell, Rita R.;  Daffonchio, Daniele G.;  Danchin, Antoine;  de Lorenzo, Victor;  Dorrestein, Pieter C.;  Finn, Robert D.;  Fraser, Claire M.;  Gilbert, Jack A.;  Hallam, Steven J.;  Hugenholtz, Philip;  Ioannidis, John P. A.;  Jansson, Janet K.;  Kim, Jihyun F.;  Klenk, Hans-Peter;  Klotz, Martin G.;  Knight, Rob;  Konstantinidis, Konstantinos T.;  Kyrpides, Nikos C.;  Mason, Christopher E.;  McHardy, Alice C.;  Meyer, Folker;  Ouzounis, Christos A.;  Patrinos, Aristides A. N.;  Podar, Mircea;  Pollard, Katherine S.;  Ravel, Jacques;  Munoz, Alejandro Reyes;  Roberts, Richard J.;  Rossello-Mora, Ramon;  Sansone, Susanna-Assunta;  Schloss, Patrick D.;  Schriml, Lynn M.;  Setubal, Joao C.;  Sorek, Rotem;  Stevens, Rick L.;  Tiedje, James M.;  Turjanski, Adrian;  Tyson, Gene W.;  Ussery, David W.;  Weinstock, George M.;  White, Owen;  Whitman, William B.;  Xenarios, Ioannis
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
Toward unrestricted use of public genomic data 期刊论文
SCIENCE, 2019, 363 (6425) : 350-+
作者:  Amann, Rudolf I.;  Baichoo, Shakuntala;  Blencowe, Benjamin J.;  Bork, Peer;  Borodovsky, Mark;  Brooksbank, Cath;  Chain, Patrick S. G.;  Colwell, Rita R.;  Daffonchio, Daniele G.;  Danchin, Antoine;  de Lorenzo, Victor;  Dorrestein, Pieter C.;  Finn, Robert D.;  Fraser, Claire M.;  Gilbert, Jack A.;  Hallam, Steven J.;  Hugenholtz, Philip;  Ioannidis, John P. A.;  Jansson, Janet K.;  Kim, Jihyun F.;  Klenk, Hans-Peter;  Klotz, Martin G.;  Knight, Rob;  Konstantinidis, Konstantinos T.;  Kyrpides, Nikos C.;  Mason, Christopher E.;  McHardy, Alice C.;  Meyer, Folker;  Ouzounis, Christos A.;  Patrinos, Aristides A. N.;  Podar, Mircea;  Pollard, Katherine S.;  Ravel, Jacques;  Munoz, Alejandro Reyes;  Roberts, Richard J.;  Rossello-Mora, Ramon;  Sansone, Susanna-Assunta;  Schloss, Patrick D.;  Schriml, Lynn M.;  Setubal, Jogo C.;  Sorek, Rotem;  Stevens, Rick L.;  Tiedje, James M.;  Turjanski, Adrian;  Tyson, Gene W.;  Ussery, David W.;  Weinstock, George M.;  White, Owen;  Whitman, William B.;  Xenarios, Ioannis
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder 期刊论文
SCIENCE, 2018, 362 (6420) : 1265-+
作者:  Gandal, Michael J.;  Zhang, Pan;  Hadjimichael, Evi;  Walker, Rebecca L.;  Chen, Chao;  Liu, Shuang;  Won, Hyejung;  van Bakel, Harm;  Varghese, Merina;  Wang, Yongjun;  Shieh, Annie W.;  Haney, Jillian;  Parhami, Sepideh;  Belmont, Judson;  Kim, Minsoo;  Losada, Patricia Moran;  Khan, Zenab;  Mleczko, Justyna;  Xia, Yan;  Dai, Rujia;  Wang, Daifeng;  Yang, Yucheng T.;  Xu, Min;  Fish, Kenneth;  Hof, Patrick R.;  Warrell, Jonathan;  Fitzgerald, Dominic;  White, Kevin;  Jaffe, Andrew E.;  Peters, Mette A.;  Gerstein, Mark;  Liu, Chunyu;  Iakoucheva, Lilia M.;  Pinto, Dalila;  Geschwind, Daniel H.
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/27
New NSF policy will stifle innovation 期刊论文
SCIENCE, 2018, 362 (6412) : 297-298
作者:  Alberts, Susan;  Anderson, Rindy;  Ballen, Cissy J.;  Barrick, Jeffrey E.;  Bordenstein, Seth;  Boyd, Sunny K.;  Bracken-Grissom, Heather;  Braun, Christopher B.;  Coppola, David M.;  Cox, Daniel N.;  Crandall, Keith A.;  Cronin, Thomas W.;  Demas, Gregory E.;  Derby, Charles D.;  Edwards, Scott V.;  Eisthen, Heather L.;  Foster, James A.;  Gilbert, Cole;  Halanych, Kenneth M.;  Herculano-Houzel, Suzana;  Hoekstra, Hopi;  Hof, Patrick R.;  Hoke, Kim L.;  Holekamp, Kay E.;  Jarvis, Erich;  Johnsen, Sonke;  Katz, Paul S.;  Kay, Leslie M.;  Kehoe, David M.;  Kelley, Darcy B.;  Kerr, Benjamin;  Ketterson, Ellen;  Kier, William M.;  Koehl, Mimi A. R.;  Last, Robert L.;  Lazazzera, Beth;  Lenski, Richard E.;  Losos, Jonathan B.;  Lutterschmidt, Deborah I.;  Lynch, Michael;  Mahon, Andrew R.;  Martindale, Mark Q.;  Martins, Emilia P.;  McClintock, James B.;  Mesce, Karen A.;  Mukhopadhyay, Suchetana;  Oakley, Todd H.;  Phelps, Steven M.;  Phillips, Richard P.;  Queller, David;  Renn, Suzy C. P.;  Rosvall, Kimberly;  Schweizer, Felix E.;  Shubin, Neil;  Silk, Joan;  Strassmann, Joan E.;  Strausfeld, Nicholas J.;  Strauss, Sharon Y.;  Striedter, Georg;  Swalla, Billie J.;  Tarrant, Ann;  Throop, Heather L.;  Turner, Paul E.;  Voss, S. Randal;  Wake, Marvalee H.;  Wares, John P.;  Webster, Mike;  White, Stephanie A.;  Wilczynski, Walter;  Wray, Greg A.;  Wright, Timothy F.
收藏  |  浏览/下载:21/0  |  提交时间:2019/11/27