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Experimental warming and its legacy effects on root dynamics following two hurricane disturbances in a wet tropical forest 期刊论文
Global Change Biology, 2021
作者:  Daniela Yaffar;  Tana E. Wood;  Sasha C. Reed;  Benjamin L. Branoff;  Molly A. Cavaleri;  Richard J. Norby
收藏  |  浏览/下载:10/0  |  提交时间:2021/10/07
Daily energy expenditure through the human life course 期刊论文
Science, 2021
作者:  Herman Pontzer;  Yosuke Yamada;  Hiroyuki Sagayama;  Philip N. Ainslie;  Lene F. Andersen;  Liam J. Anderson;  Lenore Arab;  Issaad Baddou;  Kweku Bedu-Addo;  Ellen E. Blaak;  Stephane Blanc;  Alberto G. Bonomi;  Carlijn V. C. Bouten;  Pascal Bovet;  Maciej S. Buchowski;  Nancy F. Butte;  Stefan G. Camps;  Graeme L. Close;  Jamie A. Cooper;  Richard Cooper;  Sai Krupa Das;  Lara R. Dugas;  Ulf Ekelund;  Sonja Entringer;  Terrence Forrester;  Barry W. Fudge;  Annelies H Goris;  Michael Gurven;  Catherine Hambly;  Asmaa El Hamdouchi;  Marjije B. Hoos;  Sumei Hu;  Noorjehan Joonas;  Annemiek M. Joosen;  Peter Katzmarzyk;  Kitty P. Kempen;  Misaka Kimura;  William E. Kraus;  Robert F. Kushner;  Estelle V. Lambert;  William R. Leonard;  Nader Lessan;  Corby Martin;  Anine C. Medin;  Erwin P. Meijer;  James C. Morehen;  James P. Morton;  Marian L. Neuhouser;  Teresa A. Nicklas;  Robert M. Ojiambo;  Kirsi H. Pietiläinen;  Yannis P. Pitsiladis;  Jacob Plange-Rhule;  Guy Plasqui;  Ross L. Prentice;  Roberto A. Rabinovich;  Susan B. Racette;  David A. Raichlen;  Eric Ravussin;  Rebecca M. Reynolds;  Susan B. Roberts;  Albertine J. Schuit;  Anders M. Sjödin;  Eric Stice;  Samuel S. Urlacher;  Giulio Valenti;  Ludo M. Van Etten;  Edgar A. Van Mil;  Jonathan C. K. Wells;  George Wilson;  Brian M. Wood;  Jack Yanovski;  Tsukasa Yoshida;  Xueying Zhang;  Alexia J. Murphy-Alford;  Cornelia Loechl;  Amy H. Luke;  Jennifer Rood;  Dale A. Schoeller;  Klaas R. Westerterp;  William W. Wong;  John R. Speakman;  IAEA DLW Database Consortium§
收藏  |  浏览/下载:15/0  |  提交时间:2021/08/17
COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data 期刊论文
Global Change Biology, 2020
作者:  Ben Bond‐;  Lamberty;  Danielle S. Christianson;  Avni Malhotra;  Stephanie C. Pennington;  Debjani Sihi;  Amir AghaKouchak;  Hassan Anjileli;  M. Altaf Arain;  Juan J. Armesto;  Samaneh Ashraf;  Mioko Ataka;  Dennis Baldocchi;  Thomas Andrew Black;  Nina Buchmann;  Mariah S. Carbone;  Shih‐;  Chieh Chang;  Patrick Crill;  Peter S. Curtis;  Eric A. Davidson;  Ankur R. Desai;  John E. Drake;  Tarek S. El‐;  Madany;  Michael Gavazzi;  Carolyn‐;  Monika Gö;  rres;  Christopher M. Gough;  Michael Goulden;  Jillian Gregg;  Omar Gutié;  rrez del Arroyo;  Jin‐;  Sheng He;  Takashi Hirano;  Anya Hopple;  Holly Hughes;  ;  rvi Jä;  rveoja;  Rachhpal Jassal;  Jinshi Jian;  Haiming Kan;  Jason Kaye;  Yuji Kominami;  Naishen Liang;  David Lipson;  Catriona A. Macdonald;  Kadmiel Maseyk;  Kayla Mathes;  Marguerite Mauritz;  Melanie A. Mayes;  Steve McNulty;  Guofang Miao;  Mirco Migliavacca;  Scott Miller;  Chelcy F. Miniat;  Jennifer G. Nietz;  Mats B. Nilsson;  Asko Noormets;  Hamidreza Norouzi;  Christine S. O’;  Connell;  Bruce Osborne;  Cecilio Oyonarte;  Zhuo Pang;  Matthias Peichl;  Elise Pendall;  Jorge F. Perez‐;  Quezada;  Claire L. Phillips;  Richard P. Phillips;  James W. Raich;  Alexandre A. Renchon;  Nadine K. Ruehr;  Enrique P. Sá;  nchez‐;  Cañ;  ete;  Matthew Saunders;  Kathleen E. Savage;  Marion Schrumpf;  Russell L. Scott;  Ulli Seibt;  Whendee L. Silver;  Wu Sun;  Daphne Szutu;  Kentaro Takagi;  Masahiro Takagi;  Munemasa Teramoto;  Mark G. Tjoelker;  Susan Trumbore;  Masahito Ueyama;  Rodrigo Vargas;  Ruth K. Varner;  Joseph Verfaillie;  Christoph Vogel;  Jinsong Wang;  Greg Winston;  Tana E. Wood;  Juying Wu;  Thomas Wutzler;  Jiye Zeng;  Tianshan Zha;  Quan Zhang;  Junliang Zou
收藏  |  浏览/下载:15/0  |  提交时间:2020/10/12
Continental‐scale tree‐ring‐based projection of Douglas‐fir growth: Testing the limits of space‐for‐time substitution 期刊论文
Global Change Biology, 2020
作者:  Stefan Klesse;  Robert Justin DeRose;  Flurin Babst;  Bryan A. Black;  Leander D. L. Anderegg;  Jodi Axelson;  Ailene Ettinger;  Hardy Griesbauer;  Christopher H. Guiterman;  Grant Harley;  Jill E. Harvey;  Yueh‐;  Hsin Lo;  Ann M. Lynch;  Christopher O'Connor;  Christina Restaino;  Dave Sauchyn;  John D. Shaw;  Dan J. Smith;  Lisa Wood;  Jose Villanueva‐;  ;  az;  Margaret E. K. Evans
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/06
Concurrent shifts in wintering distribution and phenology in migratory swans: Individual and generational effects 期刊论文
Global Change Biology, 2020
作者:  Rascha J. M. Nuijten;  Kevin A. Wood;  Trinus Haitjema;  Eileen C. Rees;  Bart A. Nolet
收藏  |  浏览/下载:5/0  |  提交时间:2020/06/16
Mutations that prevent caspase cleavage of RIPK1 cause autoinflammatory disease 期刊论文
NATURE, 2020, 577 (7788) : 103-+
作者:  Lalaoui, Najoua;  Boyden, Steven E.;  Oda, Hirotsugu;  Wood, Geryl M.;  Stone, Deborah L.;  Chau, Diep;  Liu, Lin;  Stoffels, Monique;  Kratina, Tobias;  Lawlor, Kate E.;  Zaal, Kristien J. M.;  Hoffmann, Patrycja M.;  Etemadi, Nima;  Shield-Artin, Kristy;  Biben, Christine;  Tsai, Wanxia Li;  Blake, Mary D.;  Kuehn, Hye Sun;  Yang, Dan;  Anderton, Holly;  Silke, Natasha;  Wachsmuth, Laurens;  Zheng, Lixin;  Moura, Natalia Sampaio;  Beck, David B.;  Gutierrez-Cruz, Gustavo;  Ombrello, Amanda K.;  Pinto-Patarroyo, Gineth P.;  Kueh, Andrew J.;  Herold, Marco J.;  Hall, Cathrine;  Wang, Hongying;  Chae, Jae Jin;  Dmitrieva, Natalia I.;  McKenzie, Mark;  Light, Amanda;  Barham, Beverly K.;  Jones, Anne;  Romeo, Tina M.;  Zhou, Qing;  Aksentijevich, Ivona;  Mullikin, James C.;  Gross, Andrew J.;  Shum, Anthony K.;  Hawkins, Edwin D.;  Masters, Seth L.;  Lenardo, Michael J.;  Boehm, Manfred;  Rosenzweig, Sergio D.;  Pasparakis, Manolis;  Voss, Anne K.;  Gadina, Massimo;  Kastner, Daniel L.;  Silke, John
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/03

RIPK1 is a key regulator of innate immune signalling pathways. To ensure an optimal inflammatory response, RIPK1 is regulated post-translationally by well-characterized ubiquitylation and phosphorylation events, as well as by caspase-8-mediated cleavage1-7. The physiological relevance of this cleavage event remains unclear, although it is thought to inhibit activation of RIPK3 and necroptosis8. Here we show that the heterozygous missense mutations D324N, D324H and D324Y prevent caspase cleavage of RIPK1 in humans and result in an early-onset periodic fever syndrome and severe intermittent lymphadenopathy-a condition we term '  cleavage-resistant RIPK1-induced autoinflammatory syndrome'  . To define the mechanism for this disease, we generated a cleavage-resistant Ripk1(D325A) mutant mouse strain. Whereas Ripk1(-/-) mice died postnatally from systemic inflammation, Ripk1(D325A/D325A) mice died during embryogenesis. Embryonic lethality was completely prevented by the combined loss of Casp8 and Ripk3, but not by loss of Ripk3 or Mlkl alone. Loss of RIPK1 kinase activity also prevented Ripk1(D325A/D325A) embryonic lethality, although the mice died before weaning from multi-organ inflammation in a RIPK3-dependent manner. Consistently, Ripk1(D325A/D325A) and Ripk1(D325A/+) cells were hypersensitive to RIPK3-dependent TNF-induced apoptosis and necroptosis. Heterozygous Ripk1(D325A/+) mice were viable and grossly normal, but were hyper-responsive to inflammatory stimuli in vivo. Our results demonstrate the importance of caspase-mediated RIPK1 cleavage during embryonic development and show that caspase cleavage of RIPK1 not only inhibits necroptosis but also maintains inflammatory homeostasis throughout life.


  
Video-based AI for beat-to-beat assessment of cardiac function 期刊论文
NATURE, 2020, 580 (7802) : 252-+
作者:  Pleguezuelos-Manzano, Cayetano;  Puschhof, Jens;  Huber, Axel Rosendahl;  van Hoeck, Arne;  Wood, Henry M.;  Nomburg, Jason;  Gurjao, Carino;  Manders, Freek;  Dalmasso, Guillaume;  Stege, Paul B.;  Paganelli, Fernanda L.;  Geurts, Maarten H.;  Beumer, Joep;  Mizutani, Tomohiro;  Miao, Yi;  van der Linden, Reinier;  van der Elst, Stefan;  Garcia, K. Christopher;  Top, Janetta;  Willems, Rob J. L.;  Giannakis, Marios;  Bonnet, Richard;  Quirke, Phil;  Meyerson, Matthew;  Cuppen, Edwin;  van Boxtel, Ruben;  Clevers, Hans
收藏  |  浏览/下载:117/0  |  提交时间:2020/07/03

A video-based deep learning algorithm-EchoNet-Dynamic-accurately identifies subtle changes in ejection fraction and classifies heart failure with reduced ejection fraction using information from multiple cardiac cycles.


Accurate assessment of cardiac function is crucial for the diagnosis of cardiovascular disease(1), screening for cardiotoxicity(2) and decisions regarding the clinical management of patients with a critical illness(3). However, human assessment of cardiac function focuses on a limited sampling of cardiac cycles and has considerable inter-observer variability despite years of training(4,5). Here, to overcome this challenge, we present a video-based deep learning algorithm-EchoNet-Dynamic-that surpasses the performance of human experts in the critical tasks of segmenting the left ventricle, estimating ejection fraction and assessing cardiomyopathy. Trained on echocardiogram videos, our model accurately segments the left ventricle with a Dice similarity coefficient of 0.92, predicts ejection fraction with a mean absolute error of 4.1% and reliably classifies heart failure with reduced ejection fraction (area under the curve of 0.97). In an external dataset from another healthcare system, EchoNet-Dynamic predicts the ejection fraction with a mean absolute error of 6.0% and classifies heart failure with reduced ejection fraction with an area under the curve of 0.96. Prospective evaluation with repeated human measurements confirms that the model has variance that is comparable to or less than that of human experts. By leveraging information across multiple cardiac cycles, our model can rapidly identify subtle changes in ejection fraction, is more reproducible than human evaluation and lays the foundation for precise diagnosis of cardiovascular disease in real time. As a resource to promote further innovation, we also make publicly available a large dataset of 10,030 annotated echocardiogram videos.


  
Developing a list of invasive alien species likely to threaten biodiversity and ecosystems in the European Union 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (3) : 1032-1048
作者:  Roy, Helen E.;  Bacher, Sven;  Essl, Franz;  Adriaens, Tim;  Aldridge, David C.;  Bishop, John D. D.;  Blackburn, Tim M.;  Branquart, Etienne;  Brodie, Juliet;  Carboneras, Carles;  Cottier-Cook, Elizabeth J.;  Copp, Gordon H.;  Dean, Hannah J.;  Eilenberg, Jorgen;  Gallardo, Belinda;  Garcia, Mariana;  Garcia-Berthou, Emili;  Genovesi, Piero;  Hulme, Philip E.;  Kenis, Marc;  Kerckhof, Francis;  Kettunen, Marianne;  Minchin, Dan;  Nentwig, Wolfgang;  Nieto, Ana;  Pergl, Jan;  Pescott, Oliver L.;  Peyton, Jodey M.;  Preda, Cristina;  Roques, Alain;  Rorke, Steph L.;  Scalera, Riccardo;  Schindler, Stefan;  Schonrogge, Karsten;  Sewell, Jack;  Solarz, Wojciech;  Stewart, Alan J. A.;  Tricarico, Elena;  Vanderhoeven, Sonia;  van der Velde, Gerard;  Vila, Montserrat;  Wood, Christine A.;  Zenetos, Argyro;  Rabitsch, Wolfgang
收藏  |  浏览/下载:23/0  |  提交时间:2019/04/09
biological invasions  consensus approach  environmental policy  impacts  introductions  prioritization  risk assessment  
Human impacts decouple a fundamental ecological relationship-The positive association between host diversity and parasite diversity 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (8) : 3666-3679
作者:  Wood, Chelsea L.;  Zgliczynski, Brian J.;  Haupt, Alison J.;  Guerra, Ana Sofia;  Micheli, Fiorenza;  Sandin, Stuart A.
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
biodiversity  biophysical coupling  coral reefs  disease  environmental change  fishing  host-parasite interactions  parasite  
The functional response and resilience in small waterbodies along land-use and environmental gradients 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (7) : 3079-3092
作者:  Thornhill, Ian A.;  Biggs, Jeremy;  Hill, Matthew J.;  Briers, Robert;  Gledhill, David;  Wood, Paul J.;  Gee, John H. R.;  Ledger, Mark;  Hassall, Christopher
收藏  |  浏览/下载:2/0  |  提交时间:2019/04/09
ecosystem functioning  ecosystem services  functional resilience  nutrient recycling  ponds  response diversity