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Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants 期刊论文
Science, 2021
作者:  Lingshu Wang;  Tongqing Zhou;  Yi Zhang;  Eun Sung Yang;  Chaim A. Schramm;  Wei Shi;  Amarendra Pegu;  Olamide K. Oloniniyi;  Amy R. Henry;  Samuel Darko;  Sandeep R. Narpala;  Christian Hatcher;  David R. Martinez;  Yaroslav Tsybovsky;  Emily Phung;  Olubukola M. Abiona;  Avan Antia;  Evan M. Cale;  Lauren A. Chang;  Misook Choe;  Kizzmekia S. Corbett;  Rachel L. Davis;  Anthony T. DiPiazza;  Ingelise J. Gordon;  Sabrina Helmold Hait;  Tandile Hermanus;  Prudence Kgagudi;  Farida Laboune;  Kwanyee Leung;  Tracy Liu;  Rosemarie D. Mason;  Alexandra F. Nazzari;  Laura Novik;  Sarah O’Connell;  Sijy O’Dell;  Adam S. Olia;  Stephen D. Schmidt;  Tyler Stephens;  Christopher D. Stringham;  Chloe Adrienna Talana;  I-Ting Teng;  Danielle A. Wagner;  Alicia T. Widge;  Baoshan Zhang;  Mario Roederer;  Julie E. Ledgerwood;  Tracy J. Ruckwardt;  Martin R. Gaudinski;  Penny L. Moore;  Nicole A. Doria-Rose;  Ralph S. Baric;  Barney S. Graham;  Adrian B. McDermott;  Daniel C. Douek;  Peter D. Kwong;  John R. Mascola;  Nancy J. Sullivan;  John Misasi
收藏  |  浏览/下载:21/0  |  提交时间:2021/08/17
Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes 期刊论文
Science, 2021
作者:  Chadi M. Saad-Roy;  Sinead E. Morris;  C. Jessica E. Metcalf;  Michael J. Mina;  Rachel E. Baker;  Jeremy Farrar;  Edward C. Holmes;  Oliver G. Pybus;  Andrea L. Graham;  Simon A. Levin;  Bryan T. Grenfell;  Caroline E. Wagner
收藏  |  浏览/下载:11/0  |  提交时间:2021/04/29
Partial immunity and SARS-CoV-2 mutations—Response 期刊论文
Science, 2021
作者:  Chadi M. Saad-Roy;  Sinead E. Morris;  C. Jessica E. Metcalf;  Michael J. Mina;  Rachel E. Baker;  Jeremy Farrar;  Edward C. Holmes;  Oliver G. Pybus;  Andrea L. Graham;  Simon A. Levin;  Bryan T. Grenfell;  Caroline E. Wagner
收藏  |  浏览/下载:11/0  |  提交时间:2021/04/29
Developmental cell programs are co-opted in inflammatory skin disease 期刊论文
Science, 2021
作者:  Gary Reynolds;  Peter Vegh;  James Fletcher;  Elizabeth F. M. Poyner;  Emily Stephenson;  Issac Goh;  Rachel A. Botting;  Ni Huang;  Bayanne Olabi;  Anna Dubois;  David Dixon;  Kile Green;  Daniel Maunder;  Justin Engelbert;  Mirjana Efremova;  Krzysztof Polański;  Laura Jardine;  Claire Jones;  Thomas Ness;  Dave Horsfall;  Jim McGrath;  Christopher Carey;  Dorin-Mirel Popescu;  Simone Webb;  Xiao-nong Wang;  Ben Sayer;  Jong-Eun Park;  Victor A. Negri;  Daria Belokhvostova;  Magnus D. Lynch;  David McDonald;  Andrew Filby;  Tzachi Hagai;  Kerstin B. Meyer;  Akhtar Husain;  Jonathan Coxhead;  Roser Vento-Tormo;  Sam Behjati;  Steven Lisgo;  Alexandra-Chloé Villani;  Jaume Bacardit;  Philip H. Jones;  Edel A. O’Toole;  Graham S. Ogg;  Neil Rajan;  Nick J. Reynolds;  Sarah A. Teichmann;  Fiona M. Watt;  Muzlifah Haniffa
收藏  |  浏览/下载:16/0  |  提交时间:2021/01/28
SARS-CoV-2 D614G variant exhibits efficient replication ex vivo and transmission in vivo 期刊论文
Science, 2020
作者:  Yixuan J. Hou;  Shiho Chiba;  Peter Halfmann;  Camille Ehre;  Makoto Kuroda;  Kenneth H. Dinnon;  Sarah R. Leist;  Alexandra Schäfer;  Noriko Nakajima;  Kenta Takahashi;  Rhianna E. Lee;  Teresa M. Mascenik;  Rachel Graham;  Caitlin E. Edwards;  Longping V. Tse;  Kenichi Okuda;  Alena J. Markmann;  Luther Bartelt;  Aravinda de Silva;  David M. Margolis;  Richard C. Boucher;  Scott H. Randell;  Tadaki Suzuki;  Lisa E. Gralinski;  Yoshihiro Kawaoka;  Ralph S. Baric
收藏  |  浏览/下载:15/0  |  提交时间:2020/12/22
Immune life history, vaccination, and the dynamics of SARS-CoV-2 over the next 5 years 期刊论文
Science, 2020
作者:  Chadi M. Saad-Roy;  Caroline E. Wagner;  Rachel E. Baker;  Sinead E. Morris;  Jeremy Farrar;  Andrea L. Graham;  Simon A. Levin;  Michael J. Mina;  C. Jessica E. Metcalf;  Bryan T. Grenfell
收藏  |  浏览/下载:10/0  |  提交时间:2020/11/20
An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity 期刊论文
NATURE, 2020, 577 (7791) : 572-+
作者:  Athukoralage, Januka S.;  McMahon, Stephen A.;  Zhang, Changyi;  Grueschow, Sabine;  Graham, Shirley;  Krupovic, Mart;  Whitaker, Rachel J.;  Gloster, Tracey M.;  White, Malcolm F.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

The CRISPR system in bacteria and archaea provides adaptive immunity against mobile genetic elements. Type III CRISPR systems detect viral RNA, resulting in the activation of two regions of the Cas10 protein: an HD nuclease domain (which degrades viral DNA)(1,2) and a cyclase domain (which synthesizes cyclic oligoadenylates from ATP)(3-5). Cyclic oligoadenylates in turn activate defence enzymes with a CRISPR-associated Rossmann fold domain(6), sculpting a powerful antiviral response(7-10) that can drive viruses to extinction(7,8). Cyclic nucleotides are increasingly implicated in host-pathogen interactions(11-13). Here we identify a new family of viral anti-CRISPR (Acr) enzymes that rapidly degrade cyclic tetra-adenylate (cA(4)). The viral ring nuclease AcrIII-1 is widely distributed in archaeal and bacterial viruses and in proviruses. The enzyme uses a previously unknown fold to bind cA(4) specifically, and a conserved active site to rapidly cleave this signalling molecule, allowing viruses to neutralize the type III CRISPR defence system. The AcrIII-1 family has a broad host range, as it targets cA(4) signalling molecules rather than specific CRISPR effector proteins. Our findings highlight the crucial role of cyclic nucleotide signalling in the conflict between viruses and their hosts.


Bacteria and archaea use cyclic oligoadenylate molecules as part of the CRISPR system for antiviral defence  here, a family of viral enzymes that rapidly degrades cyclic oligoadenylates is identified and biochemically and structurally described.


  
AQP5 enriches for stem cells and cancer origins in the distal stomach 期刊论文
NATURE, 2020, 578 (7795) : 437-+
作者:  Athukoralage, Januka S.;  McMahon, Stephen A.;  Zhang, Changyi;  Grueschow, Sabine;  Graham, Shirley;  Krupovic, Mart;  Whitaker, Rachel J.;  Gloster, Tracey M.;  White, Malcolm F.
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

LGR5 marks resident adult epithelial stem cells at the gland base in the mouse pyloric stomach(1), but the identity of the equivalent human stem cell population remains unknown owing to a lack of surface markers that facilitate its prospective isolation and validation. In mouse models of intestinal cancer, LGR5(+) intestinal stem cells are major sources of cancer following hyperactivation of the WNT pathway(2). However, the contribution of pyloric LGR5(+) stem cells to gastric cancer following dysregulation of the WNT pathway-a frequent event in gastric cancer in humans(3)-is unknown. Here we use comparative profiling of LGR5(+) stem cell populations along the mouse gastrointestinal tract to identify, and then functionally validate, the membrane protein AQP5 as a marker that enriches for mouse and human adult pyloric stem cells. We show that stem cells within the AQP5(+) compartment are a source of WNT-driven, invasive gastric cancer in vivo, using newly generated Aqp5-creERT2 mouse models. Additionally, tumour-resident AQP5(+) cells can selectively initiate organoid growth in vitro, which indicates that this population contains potential cancer stem cells. In humans, AQP5 is frequently expressed in primary intestinal and diffuse subtypes of gastric cancer (and in metastases of these subtypes), and often displays altered cellular localization compared with healthy tissue. These newly identified markers and mouse models will be an invaluable resource for deciphering the early formation of gastric cancer, and for isolating and characterizing human-stomach stem cells as a prerequisite for harnessing the regenerative-medicine potential of these cells in the clinic.


AQP5 is identified as a marker for pyloric stem cells in humans and mice, and stem cells in the AQP5(+) compartment are shown to be a source of invasive gastric cancer in mouse models.


  
An anatomic transcriptional atlas of human glioblastoma 期刊论文
SCIENCE, 2018, 360 (6389) : 660-663
作者:  Puchalski, Ralph B.;  Shah, Nameeta;  Miller, Jeremy;  Dalley, Rachel;  Nomura, Steve R.;  Yoon, Jae-Guen;  Smith, Kimberly A.;  Lankerovich, Michael;  Bertagnolli, Darren;  Bickley, Kris;  Boe, Andrew F.;  Brouner, Krissy;  Butler, Stephanie;  Caldejon, Shiella;  Chapin, Mike;  Datta, Suvro;  Dee, Nick;  Desta, Tsega;  Dolbeare, Tim;  Dotson, Nadezhda;  Ebbert, Amanda;  Feng, David;  Feng, Xu;  Fisher, Michael;  Gee, Garrett;  Goldy, Jeff;  Gourley, Lindsey;  Gregor, Benjamin W.;  Gu, Guangyu;  Hejazinia, Nika;  Hohmann, John;  Hothi, Parvinder;  Howard, Robert;  Joines, Kevin;  Kriedberg, Ali;  Kuan, Leonard;  Lau, Chris;  Lee, Felix;  Lee, Hwahyung;  Lemon, Tracy;  Long, Fuhui;  Mastan, Naveed;  Mott, Erika;  Murthy, Chantal;  Ngo, Kiet;  Olson, Eric;  Reding, Melissa;  Riley, Zack;  Rosen, David;  Sandman, David;  Shapovalova, Nadiya;  Slaughterbeck, Clifford R.;  Sodt, Andrew;  Stockdale, Graham;  Szafer, Aaron;  Wakeman, Wayne;  Wohnoutka, Paul E.;  White, Steven J.;  Marsh, Don;  Rostomily, Robert C.;  Ng, Lydia;  Dang, Chinh;  Jones, Allan;  Keogh, Bart;  Gittleman, Haley R.;  Barnholtz-Sloan, Jill S.;  Cimino, Patrick J.;  Uppin, Megha S.;  Keene, C. Dirk;  Farrokhi, Farrokh R.;  Lathia, Justin D.;  Berens, Michael E.;  Iavarone, Antonio;  Bernard, Amy;  Lein, Ed;  Phillips, John W.;  Rostad, Steven W.;  Cobbs, Charles;  Hawrylycz, Michael J.;  Foltz, Greg D.
收藏  |  浏览/下载:20/0  |  提交时间:2019/11/27
A self-consistent, multivariate method for the determination of gas-phase rate coefficients, applied to reactions of atmospheric VOCs and the hydroxyl radical 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (6) : 4039-4054
作者:  Shaw, Jacob T.;  Lidster, Richard T.;  Cryer, Danny R.;  Ramirez, Noelia;  Whiting, Fiona C.;  Boustead, Graham A.;  Whalley, Lisa K.;  Ingham, Trevor;  Rickard, Andrew R.;  Dunmore, Rachel E.;  Heard, Dwayne E.;  Lewis, Ally C.;  Carpenter, Lucy J.;  Hamilton, Jacqui F.;  Dillon, Terry J.
收藏  |  浏览/下载:15/0  |  提交时间:2019/04/09