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Allele-specific open chromatin in human iPSC neurons elucidates functional disease variants 期刊论文
Science, 2020
作者:  Siwei Zhang;  Hanwen Zhang;  Yifan Zhou;  Min Qiao;  Siming Zhao;  Alena Kozlova;  Jianxin Shi;  Alan R. Sanders;  Gao Wang;  Kaixuan Luo;  Subhajit Sengupta;  Siobhan West;  Sheng Qian;  Michael Streit;  Dimitrios Avramopoulos;  Chad A. Cowan;  Mengjie Chen;  Zhiping P. Pang;  Pablo V. Gejman;  Xin He;  Jubao Duan
收藏  |  浏览/下载:28/0  |  提交时间:2020/08/09
Floodplain inundation and salinization from a recently restored first‐order tidal stream 期刊论文
Water Resources Research, 2020
作者:  Steven B. Yabusaki;  Allison N. Myers‐;  Pigg;  Nicholas D. Ward;  Scott R. Waichler;  Aditi Sengupta;  Zhangshuan Hou;  Xingyuan Chen;  Yilin Fang;  Zhuoran Duan;  John A. Serkowski;  Julia Indivero;  Cora Wiese Moore;  Cailene M. Gunn
收藏  |  浏览/下载:17/0  |  提交时间:2020/05/25
Representing the function and sensitivity of coastal interfaces in Earth system models 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Ward, Nicholas D.;  Megonigal, J. Patrick;  Bond-Lamberty, Ben;  Bailey, Vanessa L.;  Butman, David;  Canuel, Elizabeth A.;  Diefenderfer, Heida;  Ganju, Neil K.;  Goni, Miguel A.;  Graham, Emily B.;  Hopkinson, Charles S.;  Khangaonkar, Tarang;  Langley, J. Adam;  McDowell, Nate G.;  Myers-Pigg, Allison N.;  Neumann, Rebecca B.;  Osburn, Christopher L.;  Price, Rene M.;  Rowland, Joel;  Sengupta, Aditi;  Simard, Marc;  Thornton, Peter E.;  Tzortziou, Maria;  Vargas, Rodrigo;  Weisenhorn, Pamela B.;  Windham-Myers, Lisamarie
收藏  |  浏览/下载:30/0  |  提交时间:2020/05/20
Formation of liquid-like cellular organelles depends on their composition 期刊论文
NATURE, 2020, 581 (7807) : 144-145
作者:  Sengupta, Partho P.;  Adjeroh, Donald A.
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

Phase separation of the nucleolus is composition dependent.


Liquid-like organelles in cells form when key constituents reach a certain concentration and then condense. Evidence now indicates that the concentration at which condensation occurs can vary, contrary to previous assumptions.


  
Live-animal imaging of native haematopoietic stem and progenitor cells 期刊论文
NATURE, 2020, 578 (7794) : 278-+
作者:  Gerstung, Moritz;  Jolly, Clemency;  Leshchiner, Ignaty;  Dentro, Stefan C.;  Gonzalez, Santiago;  Rosebrock, Daniel;  Mitchell, Thomas J.;  Rubanova, Yulia;  Anur, Pavana;  Yu, Kaixian;  Tarabichi, Maxime;  Deshwar, Amit;  Wintersinger, Jeff;  Kleinheinz, Kortine;  Vazquez-Garcia, Ignacio;  Haase, Kerstin;  Jerman, Lara;  Sengupta, Subhajit;  Macintyre, Geoff;  Malikic, Salem;  Donmez, Nilgun;  Livitz, Dimitri G.;  Cmero, Marek;  Demeulemeester, Jonas;  Schumacher, Steven;  Fan, Yu;  Yao, Xiaotong;  Lee, Juhee;  Schlesner, Matthias;  Boutros, Paul C.;  Bowtell, David D.;  Zhu, Hongtu;  Getz, Gad;  Imielinski, Marcin;  Beroukhim, Rameen;  Sahinalp, S. Cenk;  Ji, Yuan;  Peifer, Martin;  Markowetz, Florian;  Mustonen, Ville;  Yuan, Ke;  Wang, Wenyi;  Morris, Quaid D.;  Spellman, Paul T.;  Wedge, David C.;  Van Loo, Peter;  Deshwar, Amit G.;  Adams, David J.;  Campbell, Peter J.;  Cao, Shaolong;  Christie, Elizabeth L.;  Cun, Yupeng;  Dawson, Kevin J.;  Drews, Ruben M.;  Eils, Roland;  Fittall, Matthew;  Garsed, Dale W.;  Ha, Gavin;  Lee-Six, Henry;  Martincorena, Inigo;  Oesper, Layla;  Peto, Myron;  Raphael, Benjamin J.;  Salcedo, Adriana;  Shi, Ruian;  Shin, Seung Jun;  Spiro, Oliver;  Stein, Lincoln D.;  Vembu, Shankar;  Wheeler, David A.;  Yang, Tsun-Po
收藏  |  浏览/下载:45/0  |  提交时间:2020/07/03

The biology of haematopoietic stem cells (HSCs) has predominantly been studied under transplantation conditions(1,2). It has been particularly challenging to study dynamic HSC behaviour, given that the visualization of HSCs in the native niche in live animals has not, to our knowledge, been achieved. Here we describe a dual genetic strategy in mice that restricts reporter labelling to a subset of the most quiescent long-term HSCs (LT-HSCs) and that is compatible with current intravital imaging approaches in the calvarial bone marrow(3-5). We show that this subset of LT-HSCs resides close to both sinusoidal blood vessels and the endosteal surface. By contrast, multipotent progenitor cells (MPPs) show greater variation in distance from the endosteum and are more likely to be associated with transition zone vessels. LT-HSCs are not found in bone marrow niches with the deepest hypoxia and instead are found in hypoxic environments similar to those of MPPs. In vivo time-lapse imaging revealed that LT-HSCs at steady-state show limited motility. Activated LT-HSCs show heterogeneous responses, with some cells becoming highly motile and a fraction of HSCs expanding clonally within spatially restricted domains. These domains have defined characteristics, as HSC expansion is found almost exclusively in a subset of bone marrow cavities with bone-remodelling activity. By contrast, cavities with low bone-resorbing activity do not harbour expanding HSCs. These findings point to previously unknown heterogeneity within the bone marrow microenvironment, imposed by the stages of bone turnover. Our approach enables the direct visualization of HSC behaviours and dissection of heterogeneity in HSC niches.


A dual genetic strategy enables the labelling and in vivo imaging of native long-term haematopoietic stem cells in the mouse calvarial bone marrow.


  
Atypical plant homeodomain of UBR7 functions as an H2BK120Ub ligase and breast tumor suppressor 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Adhikary, Santanu;  Chakravarti, Deepavali;  Terranova, Christopher;  Sengupta, Isha;  Maitituoheti, Mayinuer;  Dasgupta, Anirban;  Srivastava, Dushyant Kumar;  Ma, Junsheng;  Raman, Ayush T.;  Tarco, Emily;  Sahin, Aysegul A.;  Bassett, Roland;  Yang, Fei;  Tapia, Coya;  Roy, Siddhartha;  Rai, Kunal;  Das, Chandrima
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
Moored Observations of the Surface Meteorology and Air-Sea Fluxes in the Northern Bay of Bengal in 2015 期刊论文
JOURNAL OF CLIMATE, 2019, 32 (2) : 549-573
作者:  Weller, R. A.;  Farrar, J. T.;  Seo, Hyodae;  Prend, Channing;  Sengupta, Debasis;  Lekha, J. Sree;  Ravichandran, M.;  Venkatesen, R.
收藏  |  浏览/下载:24/0  |  提交时间:2019/04/09
Atmosphere-ocean interaction  Monsoons  Air-sea interaction  Surface fluxes  
Bacteria-induced mixing in natural waters 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2017, 44 (18)
作者:  Sommer, T.;  Danza, F.;  Berg, J.;  Sengupta, A.;  Constantinescu, G.;  Tokyay, T.;  Burgmann, H.;  Dressler, Y.;  Steiner, O. Sepulveda;  Schubert, C. J.;  Tonolla, M.;  Wuest, A.
收藏  |  浏览/下载:21/0  |  提交时间:2019/04/09
Chromatium okenii  Cadagno  Bioconvection  Biogenic mixing  Microstructure