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Disturbance type and species life history predict mammal responses to humans 期刊论文
Global Change Biology, 2021
作者:  Justin P. Suraci;  Kaitlyn M. Gaynor;  Maximilian L. Allen;  Peter Alexander;  Justin S. Brashares;  Sara Cendejas-Zarelli;  Kevin Crooks;  L. Mark Elbroch;  Tavis Forrester;  Austin M. Green;  Jeffrey Haight;  Nyeema C. Harris;  Mark Hebblewhite;  Forest Isbell;  Barbara Johnston;  Roland Kays;  Patrick E. Lendrum;  Jesse S. Lewis;  Alex McInturff;  William McShea;  Thomas W. Murphy;  Meredith S. Palmer;  Arielle Parsons;  Mitchell A. Parsons;  Mary E. Pendergast;  Charles Pekins;  Laura R. Prugh;  Kimberly A. Sager-Fradkin;  Stephanie Schuttler;  Ç;  ;  an H. Ş;  ekercioğ;  lu;  Brenda Shepherd;  Laura Whipple;  Jesse Whittington;  George Wittemyer;  Christopher C. Wilmers
收藏  |  浏览/下载:51/0  |  提交时间:2021/06/07
Mapping out a future for ungulate migrations 期刊论文
Science, 2021
作者:  Matthew J. Kauffman;  Francesca Cagnacci;  Simon Chamaillé-Jammes;  Mark Hebblewhite;  J. Grant C. Hopcraft;  Jerod A. Merkle;  Thomas Mueller;  Atle Mysterud;  Wibke Peters;  Christiane Roettger;  Alethea Steingisser;  James E. Meacham;  Kasahun Abera;  Jan Adamczewski;  Ellen O. Aikens;  Hattie Bartlam-Brooks;  Emily Bennitt;  Joel Berger;  Charlotte Boyd;  Steeve D. Côté;  Lucie Debeffe;  Andrea S. Dekrout;  Nandintsetseg Dejid;  Emiliano Donadio;  Luthando Dziba;  William F. Fagan;  Claude Fischer;  Stefano Focardi;  John M. Fryxell;  Richard W. S. Fynn;  Chris Geremia;  Benito A. González;  Anne Gunn;  Elie Gurarie;  Marco Heurich;  Jodi Hilty;  Mark Hurley;  Aran Johnson;  Kyle Joly;  Petra Kaczensky;  Corinne J. Kendall;  Pavel Kochkarev;  Leonid Kolpaschikov;  Rafał Kowalczyk;  Frank van Langevelde;  Binbin V. Li;  Alex L. Lobora;  Anne Loison;  Tinaapi H. Madiri;  David Mallon;  Pascal Marchand;  Rodrigo A. Medellin;  Erling Meisingset;  Evelyn Merrill;  Arthur D. Middleton;  Kevin L. Monteith;  Malik Morjan;  Thomas A. Morrison;  Steffen Mumme;  Robin Naidoo;  Andres Novaro;  Joseph O. Ogutu;  Kirk A. Olson;  Alfred Oteng-Yeboah;  Ramiro J. A. Ovejero;  Norman Owen-Smith;  Antti Paasivaara;  Craig Packer;  Danila Panchenko;  Luca Pedrotti;  Andrew J. Plumptre;  Christer M. Rolandsen;  Sonia Said;  Albert Salemgareyev;  Aleksandr Savchenko;  Piotr Savchenko;  Hall Sawyer;  Moses Selebatso;  Matthew Skroch;  Erling Solberg;  Jared A. Stabach;  Olav Strand;  Michael J. Suitor;  Yasuyuki Tachiki;  Anne Trainor;  Arnold Tshipa;  Munir Z. Virani;  Carly Vynne;  Stephanie Ward;  George Wittemyer;  Wenjing Xu;  Steffen Zuther
收藏  |  浏览/下载:52/0  |  提交时间:2021/05/14
Transient rest restores functionality in exhausted CAR-T cells through epigenetic remodeling 期刊论文
Science, 2021
作者:  Evan W. Weber;  Kevin R. Parker;  Elena Sotillo;  Rachel C. Lynn;  Hima Anbunathan;  John Lattin;  Zinaida Good;  Julia A. Belk;  Bence Daniel;  Dorota Klysz;  Meena Malipatlolla;  Peng Xu;  Malek Bashti;  Sabine Heitzeneder;  Louai Labanieh;  Panayiotis Vandris;  Robbie G. Majzner;  Yanyan Qi;  Katalin Sandor;  Ling-Chun Chen;  Snehit Prabhu;  Andrew J. Gentles;  Thomas J. Wandless;  Ansuman T. Satpathy;  Howard Y. Chang;  Crystal L. Mackall
收藏  |  浏览/下载:48/0  |  提交时间:2021/04/06
Noncanonical scaffolding of Gαi and β-arrestin by G protein–coupled receptors 期刊论文
Science, 2021
作者:  Jeffrey S. Smith;  Thomas F. Pack;  Asuka Inoue;  Claudia Lee;  Kevin Zheng;  Issac Choi;  Dylan S. Eiger;  Anmol Warman;  Xinyu Xiong;  Zhiyuan Ma;  Gayathri Viswanathan;  Ian M. Levitan;  Lauren K. Rochelle;  Dean P. Staus;  Joshua C. Snyder;  Alem W. Kahsai;  Marc G. Caron;  Sudarshan Rajagopal
收藏  |  浏览/下载:26/0  |  提交时间:2021/03/17
Recapitulation of HIV-1 Env-antibody coevolution in macaques leading to neutralization breadth 期刊论文
Science, 2021
作者:  Ryan S. Roark;  Hui Li;  Wilton B. Williams;  Hema Chug;  Rosemarie D. Mason;  Jason Gorman;  Shuyi Wang;  Fang-Hua Lee;  Juliette Rando;  Mattia Bonsignori;  Kwan-Ki Hwang;  Kevin O. Saunders;  Kevin Wiehe;  M. Anthony Moody;  Peter T. Hraber;  Kshitij Wagh;  Elena E. Giorgi;  Ronnie M. Russell;  Frederic Bibollet-Ruche;  Weimin Liu;  Jesse Connell;  Andrew G. Smith;  Julia DeVoto;  Alexander I. Murphy;  Jessica Smith;  Wenge Ding;  Chengyan Zhao;  Neha Chohan;  Maho Okumura;  Christina Rosario;  Yu Ding;  Emily Lindemuth;  Anya M. Bauer;  Katharine J. Bar;  David Ambrozak;  Cara W. Chao;  Gwo-Yu Chuang;  Hui Geng;  Bob C. Lin;  Mark K. Louder;  Richard Nguyen;  Baoshan Zhang;  Mark G. Lewis;  Donald D. Raymond;  Nicole A. Doria-Rose;  Chaim A. Schramm;  Daniel C. Douek;  Mario Roederer;  Thomas B. Kepler;  Garnett Kelsoe;  John R. Mascola;  Peter D. Kwong;  Bette T. Korber;  Stephen C. Harrison;  Barton F. Haynes;  Beatrice H. Hahn;  George M. Shaw
收藏  |  浏览/下载:62/0  |  提交时间:2021/01/15
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms 期刊论文
Science, 2020
作者:  David E. Gordon;  Joseph Hiatt;  Mehdi Bouhaddou;  Veronica V. Rezelj;  Svenja Ulferts;  Hannes Braberg;  Alexander S. Jureka;  Kirsten Obernier;  Jeffrey Z. Guo;  Jyoti Batra;  Robyn M. Kaake;  Andrew R. Weckstein;  Tristan W. Owens;  Meghna Gupta;  Sergei Pourmal;  Erron W. Titus;  Merve Cakir;  Margaret Soucheray;  Michael McGregor;  Zeynep Cakir;  Gwendolyn Jang;  Matthew J. O’Meara;  Tia A. Tummino;  Ziyang Zhang;  Helene Foussard;  Ajda Rojc;  Yuan Zhou;  Dmitry Kuchenov;  Ruth Hüttenhain;  Jiewei Xu;  Manon Eckhardt;  Danielle L. Swaney;  Jacqueline M. Fabius;  Manisha Ummadi;  Beril Tutuncuoglu;  Ujjwal Rathore;  Maya Modak;  Paige Haas;  Kelsey M. Haas;  Zun Zar Chi Naing;  Ernst H. Pulido;  Ying Shi;  Inigo Barrio-Hernandez;  Danish Memon;  Eirini Petsalaki;  Alistair Dunham;  Miguel Correa Marrero;  David Burke;  Cassandra Koh;  Thomas Vallet;  Jesus A. Silvas;  Caleigh M. Azumaya;  Christian Billesbølle;  Axel F. Brilot;  Melody G. Campbell;  Amy Diallo;  Miles Sasha Dickinson;  Devan Diwanji;  Nadia Herrera;  Nick Hoppe;  Huong T. Kratochvil;  Yanxin Liu;  Gregory E. Merz;  Michelle Moritz;  Henry C. Nguyen;  Carlos Nowotny;  Cristina Puchades;  Alexandrea N. Rizo;  Ursula Schulze-Gahmen;  Amber M. Smith;  Ming Sun;  Iris D. Young;  Jianhua Zhao;  Daniel Asarnow;  Justin Biel;  Alisa Bowen;  Julian R. Braxton;  Jen Chen;  Cynthia M. Chio;  Un Seng Chio;  Ishan Deshpande;  Loan Doan;  Bryan Faust;  Sebastian Flores;  Mingliang Jin;  Kate Kim;  Victor L. Lam;  Fei Li;  Junrui Li;  Yen-Li Li;  Yang Li;  Xi Liu;  Megan Lo;  Kyle E. Lopez;  Arthur A. Melo;  Frank R. Moss;  Phuong Nguyen;  Joana Paulino;  Komal Ishwar Pawar;  Jessica K. Peters;  Thomas H. Pospiech;  Maliheh Safari;  Smriti Sangwan;  Kaitlin Schaefer;  Paul V. Thomas;  Aye C. Thwin;  Raphael Trenker;  Eric Tse;  Tsz Kin Martin Tsui;  Feng Wang;  Natalie Whitis;  Zanlin Yu;  Kaihua Zhang;  Yang Zhang;  Fengbo Zhou;  Daniel Saltzberg;  QCRG Structural Biology Consortium12†;  Anthony J. Hodder;  Amber S. Shun-Shion;  Daniel M. Williams;  Kris M. White;  Romel Rosales;  Thomas Kehrer;  Lisa Miorin;  Elena Moreno;  Arvind H. Patel;  Suzannah Rihn;  Mir M. Khalid;  Albert Vallejo-Gracia;  Parinaz Fozouni;  Camille R. Simoneau;  Theodore L. Roth;  David Wu;  Mohd Anisul Karim;  Maya Ghoussaini;  Ian Dunham;  Francesco Berardi;  Sebastian Weigang;  Maxime Chazal;  Jisoo Park;  James Logue;  Marisa McGrath;  Stuart Weston;  Robert Haupt;  C. James Hastie;  Matthew Elliott;  Fiona Brown;  Kerry A. Burness;  Elaine Reid;  Mark Dorward;  Clare Johnson;  Stuart G. Wilkinson;  Anna Geyer;  Daniel M. Giesel;  Carla Baillie;  Samantha Raggett;  Hannah Leech;  Rachel Toth;  Nicola Goodman;  Kathleen C. Keough;  Abigail L. Lind;  Zoonomia Consortium‡;  Reyna J. Klesh;  Kafi R. Hemphill;  Jared Carlson-Stevermer;  Jennifer Oki;  Kevin Holden;  Travis Maures;  Katherine S. Pollard;  Andrej Sali;  David A. Agard;  Yifan Cheng;  James S. Fraser;  Adam Frost;  Natalia Jura;  Tanja Kortemme;  Aashish Manglik;  Daniel R. Southworth;  Robert M. Stroud;  Dario R. Alessi;  Paul Davies;  Matthew B. Frieman;  Trey Ideker;  Carmen Abate;  Nolwenn Jouvenet;  Georg Kochs;  Brian Shoichet;  Melanie Ott;  Massimo Palmarini;  Kevan M. Shokat;  Adolfo García-Sastre;  Jeremy A. Rassen;  Robert Grosse;  Oren S. Rosenberg;  Kliment A. Verba;  Christopher F. Basler;  Marco Vignuzzi;  Andrew A. Peden;  Pedro Beltrao;  Nevan J. Krogan
收藏  |  浏览/下载:75/0  |  提交时间:2020/12/07
De novo design of potent and resilient hACE2 decoys to neutralize SARS-CoV-2 期刊论文
Science, 2020
作者:  Thomas W. Linsky;  Renan Vergara;  Nuria Codina;  Jorgen W. Nelson;  Matthew J. Walker;  Wen Su;  Christopher O. Barnes;  Tien-Ying Hsiang;  Katharina Esser-Nobis;  Kevin Yu;  Z. Beau Reneer;  Yixuan J. Hou;  Tanu Priya;  Masaya Mitsumoto;  Avery Pong;  Uland Y. Lau;  Marsha L. Mason;  Jerry Chen;  Alex Chen;  Tania Berrocal;  Hong Peng;  Nicole S. Clairmont;  Javier Castellanos;  Yu-Ru Lin;  Anna Josephson-Day;  Ralph S. Baric;  Deborah H. Fuller;  Carl D. Walkey;  Ted M. Ross;  Ryan Swanson;  Pamela J. Bjorkman;  Michael Gale;  Luis M. Blancas-Mejia;  Hui-Ling Yen;  Daniel-Adriano Silva
收藏  |  浏览/下载:33/0  |  提交时间:2020/12/07
Climate drives the geography of marine consumption by changing predator communities 期刊论文
Proceedings of the National Academy of Sciences, 2020
作者:  Matthew A. Whalen;  Ross D. B. Whippo;  John J. Stachowicz;  Paul H. York;  Erin Aiello;  Teresa Alcoverro;  Andrew H. Altieri;  Lisandro Benedetti-Cecchi;  Camilla Bertolini;  Midoli Bresch;  Fabio Bulleri;  Paul E. Carnell;  Stéphanie Cimon;  Rod M. Connolly;  Mathieu Cusson;  Meredith S. Diskin;  Elrika D’Souza;  Augusto A. V. Flores;  F. Joel Fodrie;  Aaron W. E. Galloway;  Leo C. Gaskins;  Olivia J. Graham;  Torrance C. Hanley;  Christopher J. Henderson;  Clara M. Hereu;  Margot Hessing-Lewis;  Kevin A. Hovel;  Brent B. Hughes;  A. Randall Hughes;  Kristin M. Hultgren;  Holger Jänes;  Dean S. Janiak;  Lane N. Johnston;  Pablo Jorgensen;  Brendan P. Kelaher;  Claudia Kruschel;  Brendan S. Lanham;  Kun-Seop Lee;  Jonathan S. Lefcheck;  Enrique Lozano-Álvarez;  Peter I. Macreadie;  Zachary L. Monteith;  Nessa E. O’Connor;  Andrew D. Olds;  Jennifer K. O’Leary;  Christopher J. Patrick;  Oscar Pino;  Alistair G. B. Poore;  Michael A. Rasheed;  Wendel W. Raymond;  Katrin Reiss;  O. Kennedy Rhoades;  Max T. Robinson;  Paige G. Ross;  Francesca Rossi;  Thomas A. Schlacher;  Janina Seemann;  Brian R. Silliman;  Delbert L. Smee;  Martin Thiel;  Richard K. F. Unsworth;  Brigitta I. van Tussenbroek;  Adriana Vergés;  Mallarie E. Yeager;  Bree K. Yednock;  Shelby L. Ziegler;  J. Emmett Duffy
收藏  |  浏览/下载:59/0  |  提交时间:2020/11/09
Structural transitions in influenza haemagglutinin at membrane fusion pH 期刊论文
NATURE, 2020, 583 (7814) : 150-+
作者:  Wei, Kevin;  Korsunsky, Ilya;  Marshall, Jennifer L.;  Gao, Anqi;  Watts, Gerald F. M.;  Major, Triin;  Croft, Adam P.;  Watts, Jordan;  Blazar, Philip E.;  Lange, Jeffrey K.;  Thornhill, Thomas S.;  Filer, Andrew;  Raza, Karim;  Donlin, Laura T.;  Siebel, Christian W.
收藏  |  浏览/下载:35/0  |  提交时间:2020/07/03

Cryo-electron microscopy studies of the influenza haemagglutinin glycoprotein at the low pH of host endosomes reveals structural intermediates, offering a dynamic view of how the protein mediates membrane fusion.


Infection by enveloped viruses involves fusion of their lipid envelopes with cellular membranes to release the viral genome into cells. For HIV, Ebola, influenza and numerous other viruses, envelope glycoproteins bind the infecting virion to cell-surface receptors and mediate membrane fusion. In the case of influenza, the receptor-binding glycoprotein is the haemagglutinin (HA), and following receptor-mediated uptake of the bound virus by endocytosis(1), it is the HA that mediates fusion of the virus envelope with the membrane of the endosome(2). Each subunit of the trimeric HA consists of two disulfide-linked polypeptides, HA1 and HA2. The larger, virus-membrane-distal, HA1 mediates receptor binding  the smaller, membrane-proximal, HA2 anchors HA in the envelope and contains the fusion peptide, a region that is directly involved in membrane interaction(3). The low pH of endosomes activates fusion by facilitating irreversible conformational changes in the glycoprotein. The structures of the initial HA at neutral pH and the final HA at fusion pH have been investigated by electron microscopy(4,5) and X-ray crystallography(6-8). Here, to further study the process of fusion, we incubate HA for different times at pH 5.0 and directly image structural changes using single-particle cryo-electron microscopy. We describe three distinct, previously undescribed forms of HA, most notably a 150 angstrom-long triple-helical coil of HA2, which may bridge between the viral and endosomal membranes. Comparison of these structures reveals concerted conformational rearrangements through which the HA mediates membrane fusion.


  
Live-animal imaging of native haematopoietic stem and progenitor cells 期刊论文
NATURE, 2020, 578 (7794) : 278-+
作者:  Gerstung, Moritz;  Jolly, Clemency;  Leshchiner, Ignaty;  Dentro, Stefan C.;  Gonzalez, Santiago;  Rosebrock, Daniel;  Mitchell, Thomas J.;  Rubanova, Yulia;  Anur, Pavana;  Yu, Kaixian;  Tarabichi, Maxime;  Deshwar, Amit;  Wintersinger, Jeff;  Kleinheinz, Kortine;  Vazquez-Garcia, Ignacio;  Haase, Kerstin;  Jerman, Lara;  Sengupta, Subhajit;  Macintyre, Geoff;  Malikic, Salem;  Donmez, Nilgun;  Livitz, Dimitri G.;  Cmero, Marek;  Demeulemeester, Jonas;  Schumacher, Steven;  Fan, Yu;  Yao, Xiaotong;  Lee, Juhee;  Schlesner, Matthias;  Boutros, Paul C.;  Bowtell, David D.;  Zhu, Hongtu;  Getz, Gad;  Imielinski, Marcin;  Beroukhim, Rameen;  Sahinalp, S. Cenk;  Ji, Yuan;  Peifer, Martin;  Markowetz, Florian;  Mustonen, Ville;  Yuan, Ke;  Wang, Wenyi;  Morris, Quaid D.;  Spellman, Paul T.;  Wedge, David C.;  Van Loo, Peter;  Deshwar, Amit G.;  Adams, David J.;  Campbell, Peter J.;  Cao, Shaolong;  Christie, Elizabeth L.;  Cun, Yupeng;  Dawson, Kevin J.;  Drews, Ruben M.;  Eils, Roland;  Fittall, Matthew;  Garsed, Dale W.;  Ha, Gavin;  Lee-Six, Henry;  Martincorena, Inigo;  Oesper, Layla;  Peto, Myron;  Raphael, Benjamin J.;  Salcedo, Adriana;  Shi, Ruian;  Shin, Seung Jun;  Spiro, Oliver;  Stein, Lincoln D.;  Vembu, Shankar;  Wheeler, David A.;  Yang, Tsun-Po
收藏  |  浏览/下载:45/0  |  提交时间:2020/07/03

The biology of haematopoietic stem cells (HSCs) has predominantly been studied under transplantation conditions(1,2). It has been particularly challenging to study dynamic HSC behaviour, given that the visualization of HSCs in the native niche in live animals has not, to our knowledge, been achieved. Here we describe a dual genetic strategy in mice that restricts reporter labelling to a subset of the most quiescent long-term HSCs (LT-HSCs) and that is compatible with current intravital imaging approaches in the calvarial bone marrow(3-5). We show that this subset of LT-HSCs resides close to both sinusoidal blood vessels and the endosteal surface. By contrast, multipotent progenitor cells (MPPs) show greater variation in distance from the endosteum and are more likely to be associated with transition zone vessels. LT-HSCs are not found in bone marrow niches with the deepest hypoxia and instead are found in hypoxic environments similar to those of MPPs. In vivo time-lapse imaging revealed that LT-HSCs at steady-state show limited motility. Activated LT-HSCs show heterogeneous responses, with some cells becoming highly motile and a fraction of HSCs expanding clonally within spatially restricted domains. These domains have defined characteristics, as HSC expansion is found almost exclusively in a subset of bone marrow cavities with bone-remodelling activity. By contrast, cavities with low bone-resorbing activity do not harbour expanding HSCs. These findings point to previously unknown heterogeneity within the bone marrow microenvironment, imposed by the stages of bone turnover. Our approach enables the direct visualization of HSC behaviours and dissection of heterogeneity in HSC niches.


A dual genetic strategy enables the labelling and in vivo imaging of native long-term haematopoietic stem cells in the mouse calvarial bone marrow.