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Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil 期刊论文
Science, 2021
作者:  Nuno R. Faria;  Thomas A. Mellan;  Charles Whittaker;  Ingra M. Claro;  Darlan da S. Candido;  Swapnil Mishra;  Myuki A. E. Crispim;  Flavia C. S. Sales;  Iwona Hawryluk;  John T. McCrone;  Ruben J. G. Hulswit;  Lucas A. M. Franco;  Mariana S. Ramundo;  Jaqueline G. de Jesus;  Pamela S. Andrade;  Thais M. Coletti;  Giulia M. Ferreira;  Camila A. M. Silva;  Erika R. Manuli;  Rafael H. M. Pereira;  Pedro S. Peixoto;  Moritz U. G. Kraemer;  Nelson Gaburo;  Cecilia da C. Camilo;  Henrique Hoeltgebaum;  William M. Souza;  Esmenia C. Rocha;  Leandro M. de Souza;  Mariana C. de Pinho;  Leonardo J. T. Araujo;  Frederico S. V. Malta;  Aline B. de Lima;  Joice do P. Silva;  Danielle A. G. Zauli;  Alessandro C. de S. Ferreira;  Ricardo P. Schnekenberg;  Daniel J. Laydon;  Patrick G. T. Walker;  Hannah M. Schlüter;  Ana L. P. dos Santos;  Maria S. Vidal;  Valentina S. Del Caro;  Rosinaldo M. F. Filho;  Helem M. dos Santos;  Renato S. Aguiar;  José L. Proença-Modena;  Bruce Nelson;  James A. Hay;  Mélodie Monod;  Xenia Miscouridou;  Helen Coupland;  Raphael Sonabend;  Michaela Vollmer;  Axel Gandy;  Carlos A. Prete;  Vitor H. Nascimento;  Marc A. Suchard;  Thomas A. Bowden;  Sergei L. K. Pond;  Chieh-Hsi Wu;  Oliver Ratmann;  Neil M. Ferguson;  Christopher Dye;  Nick J. Loman;  Philippe Lemey;  Andrew Rambaut;  Nelson A. Fraiji;  Maria do P. S. S. Carvalho;  Oliver G. Pybus;  Seth Flaxman;  Samir Bhatt;  Ester C. Sabino
收藏  |  浏览/下载:45/0  |  提交时间:2021/06/07
Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic 期刊论文
Science, 2021
作者:  Lewis F. Buss;  Carlos A. Prete;  Claudia M. M. Abrahim;  Alfredo Mendrone;  Tassila Salomon;  Cesar de Almeida-Neto;  Rafael F. O. França;  Maria C. Belotti;  Maria P. S. S. Carvalho;  Allyson G. Costa;  Myuki A. E. Crispim;  Suzete C. Ferreira;  Nelson A. Fraiji;  Susie Gurzenda;  Charles Whittaker;  Leonardo T. Kamaura;  Pedro L. Takecian;  Pedro da Silva Peixoto;  Marcio K. Oikawa;  Anna S. Nishiya;  Vanderson Rocha;  Nanci A. Salles;  Andreza Aruska de Souza Santos;  Martirene A. da Silva;  Brian Custer;  Kris V. Parag;  Manoel Barral-Netto;  Moritz U. G. Kraemer;  Rafael H. M. Pereira;  Oliver G. Pybus;  Michael P. Busch;  Márcia C. Castro;  Christopher Dye;  Vítor H. Nascimento;  Nuno R. Faria;  Ester C. Sabino
收藏  |  浏览/下载:32/0  |  提交时间:2021/01/22
Evolution and epidemic spread of SARS-CoV-2 in Brazil 期刊论文
Science, 2020
作者:  Darlan S. Candido;  Ingra M. Claro;  Jaqueline G. de Jesus;  William M. Souza;  Filipe R. R. Moreira;  Simon Dellicour;  Thomas A. Mellan;  Louis du Plessis;  Rafael H. M. Pereira;  Flavia C. S. Sales;  Erika R. Manuli;  Julien Thézé;  Luiz Almeida;  Mariane T. Menezes;  Carolina M. Voloch;  Marcilio J. Fumagalli;  Thaís M. Coletti;  Camila A. M. da Silva;  Mariana S. Ramundo;  Mariene R. Amorim;  Henrique H. Hoeltgebaum;  Swapnil Mishra;  Mandev S. Gill;  Luiz M. Carvalho;  Lewis F. Buss;  Carlos A. Prete;  Jordan Ashworth;  Helder I. Nakaya;  Pedro S. Peixoto;  Oliver J. Brady;  Samuel M. Nicholls;  Amilcar Tanuri;  Átila D. Rossi;  Carlos K. V. Braga;  Alexandra L. Gerber;  Ana Paula de C. Guimarães;  Nelson Gaburo;  Cecila Salete Alencar;  Alessandro C. S. Ferreira;  Cristiano X. Lima;  José Eduardo Levi;  Celso Granato;  Giulia M. Ferreira;  Ronaldo S. Francisco;  Fabiana Granja;  Marcia T. Garcia;  Maria Luiza Moretti;  Mauricio W. Perroud;  Terezinha M. P. P. Castiñeiras;  Carolina S. Lazari;  Sarah C. Hill;  Andreza Aruska de Souza Santos;  Camila L. Simeoni;  Julia Forato;  Andrei C. Sposito;  Angelica Z. Schreiber;  Magnun N. N. Santos;  Camila Zolini de Sá;  Renan P. Souza;  Luciana C. Resende-Moreira;  Mauro M. Teixeira;  Josy Hubner;  Patricia A. F. Leme;  Rennan G. Moreira;  Maurício L. Nogueira;  Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology Genomic Network;  Neil M. Ferguson;  Silvia F. Costa;  José Luiz Proenca-Modena;  Ana Tereza R. Vasconcelos;  Samir Bhatt;  Philippe Lemey;  Chieh-Hsi Wu;  Andrew Rambaut;  Nick J. Loman;  Renato S. Aguiar;  Oliver G. Pybus;  Ester C. Sabino;  Nuno Rodrigues Faria
收藏  |  浏览/下载:37/0  |  提交时间:2020/09/08
Current European flood-rich period exceptional compared with past 500 years 期刊论文
NATURE, 2020, 583 (7817) : 560-+
作者:  ;  nter Blö;  schl;  Andrea Kiss;  Alberto Viglione;  Mariano Barriendos;  Oliver Bö;  hm;  Rudolf Brá;  zdil;  Denis Coeur;  Gaston Demaré;  e;  Maria Carmen Llasat;  Neil Macdonald;  Dag Retsö;  Lars Roald;  Petra Schmocker-Fackel;  Inê;  s Amorim;  Monika Bě;  ;  nová;  Gerardo Benito;  Chiara Bertolin;  Dario Camuffo;  Daniel Cornel;  Radosł;  aw Doktor;  ;  bor Elleder;  Silvia Enzi;  Joã;  o Carlos Garcia;  ;  diger Glaser;  Julia Hall;  Klaus Haslinger;  Michael Hofstä;  tter;  ;  rgen Komma;  Danuta Limanó;  wka;  David Lun;  Andrei Panin;  Juraj Parajka;  Hrvoje Petrić;  Fernando S. Rodrigo;  Christian Rohr;  Johannes Schö;  nbein;  Lothar Schulte;  Luí;  s Pedro Silva;  Willem H. J. Toonen;  Peter Valent;  ;  rgen Waser;  Oliver Wetter
收藏  |  浏览/下载:81/0  |  提交时间:2020/08/09

There are concerns that recent climate change is altering the frequency and magnitude of river floods in an unprecedented way(1). Historical studies have identified flood-rich periods in the past half millennium in various regions of Europe(2). However, because of the low temporal resolution of existing datasets and the relatively low number of series, it has remained unclear whether Europe is currently in a flood-rich period from a long-term perspective. Here we analyse how recent decades compare with the flood history of Europe, using a new database composed of more than 100 high-resolution (sub-annual) historical flood series based on documentary evidence covering all major regions of Europe. We show that the past three decades were among the most flood-rich periods in Europe in the past 500 years, and that this period differs from other flood-rich periods in terms of its extent, air temperatures and flood seasonality. We identified nine flood-rich periods and associated regions. Among the periods richest in floods are 1560-1580 (western and central Europe), 1760-1800 (most of Europe), 1840-1870 (western and southern Europe) and 1990-2016 (western and central Europe). In most parts of Europe, previous flood-rich periods occurred during cooler-than-usual phases, but the current flood-rich period has been much warmer. Flood seasonality is also more pronounced in the recent period. For example, during previous flood and interflood periods, 41 per cent and 42 per cent of central European floods occurred in summer, respectively, compared with 55 per cent of floods in the recent period. The exceptional nature of the present-day flood-rich period calls for process-based tools for flood-risk assessment that capture the physical mechanisms involved, and management strategies that can incorporate the recent changes in risk.


Analysis of thousands of historical documents recording floods in Europe shows that flooding characteristics in recent decades are unlike those of previous centuries.


  
Highly porous nature of a primitive asteroid revealed by thermal imaging 期刊论文
NATURE, 2020, 579 (7800) : 518-522
作者:  Quinn, Robert A.;  Melnik, Alexey, V;  Vrbanac, Alison;  Fu, Ting;  Patras, Kathryn A.;  Christy, Mitchell P.;  Bodai, Zsolt;  Belda-Ferre, Pedro;  Tripathi, Anupriya;  Chung, Lawton K.;  Downes, Michael;  Welch, Ryan D.;  Quinn, Melissa;  Humphrey, Greg;  Panitchpakdi, Morgan;  Weldon, Kelly C.;  Aksenov, Alexander;  da Silva, Ricardo;  Avila-Pacheco, Julian;  Clish, Clary;  Bae, Sena;  Mallick, Himel;  Franzosa, Eric A.;  Lloyd-Price, Jason;  Bussell, Robert;  Thron, Taren;  Nelson, Andrew T.;  Wang, Mingxun;  Leszczynski, Eric;  Vargas, Fernando;  Gauglitz, Julia M.;  Meehan, Michael J.;  Gentry, Emily;  Arthur, Timothy D.;  Komor, Alexis C.;  Poulsen, Orit;  Boland, Brigid S.;  Chang, John T.;  Sandborn, William J.;  Lim, Meerana;  Garg, Neha;  Lumeng, Julie C.;  Xavier, Ramnik J.;  Kazmierczak, Barbara, I;  Jain, Ruchi;  Egan, Marie;  Rhee, Kyung E.;  Ferguson, David;  Raffatellu, Manuela;  Vlamakis, Hera;  Haddad, Gabriel G.;  Siegel, Dionicio;  Huttenhower, Curtis;  Mazmanian, Sarkis K.;  Evans, Ronald M.;  Nizet, Victor;  Knight, Rob;  Dorrestein, Pieter C.
收藏  |  浏览/下载:98/0  |  提交时间:2020/05/13

Carbonaceous (C-type) asteroids(1) are relics of the early Solar System that have preserved primitive materials since their formation approximately 4.6 billion years ago. They are probably analogues of carbonaceous chondrites(2,3) and are essential for understanding planetary formation processes. However, their physical properties remain poorly known because carbonaceous chondrite meteoroids tend not to survive entry to Earth'  s atmosphere. Here we report on global one-rotation thermographic images of the C-type asteroid 162173 Ryugu, taken by the thermal infrared imager (TIR)(4) onboard the spacecraft Hayabusa2(5), indicating that the asteroid'  s boulders and their surroundings have similar temperatures, with a derived thermal inertia of about 300 J m(-2) s(-0.5) K-1 (300 tiu). Contrary to predictions that the surface consists of regolith and dense boulders, this low thermal inertia suggests that the boulders are more porous than typical carbonaceous chondrites(6) and that their surroundings are covered with porous fragments more than 10 centimetres in diameter. Close-up thermal images confirm the presence of such porous fragments and the flat diurnal temperature profiles suggest a strong surface roughness effect(7,8). We also observed in the close-up thermal images boulders that are colder during the day, with thermal inertia exceeding 600 tiu, corresponding to dense boulders similar to typical carbonaceous chondrites(6). These results constrain the formation history of Ryugu: the asteroid must be a rubble pile formed from impact fragments of a parent body with microporosity(9) of approximately 30 to 50 per cent that experienced a low degree of consolidation. The dense boulders might have originated from the consolidated innermost region or they may have an exogenic origin. This high-porosity asteroid may link cosmic fluffy dust to dense celestial bodies(10).


Thermal imaging data obtained from the spacecraft Hayabusa2 reveal that the carbonaceous asteroid 162173 Ryugu is an object of unusually high porosity.


  
How emissions uncertainty influences the distribution and radiative impacts of smoke from fires in North America 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (4) : 2073-2097
作者:  Carter, Therese S.;  Heald, Colette L.;  Jimenez, Jose L.;  Campuzano-Jost, Pedro;  Kondo, Yutaka;  Moteki, Nobuhiro;  Schwarz, Joshua P.;  Wiedinmyer, Christine;  Darmenov, Anton S.;  da Silva, Arlindo M.;  Kaiser, Johannes W.
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/02
Experimental demonstration of memory-enhanced quantum communication 期刊论文
NATURE, 2020
作者:  Quinn, Robert A.;  Melnik, Alexey, V;  Vrbanac, Alison;  Fu, Ting;  Patras, Kathryn A.;  Christy, Mitchell P.;  Bodai, Zsolt;  Belda-Ferre, Pedro;  Tripathi, Anupriya;  Chung, Lawton K.;  Downes, Michael;  Welch, Ryan D.;  Quinn, Melissa;  Humphrey, Greg;  Panitchpakdi, Morgan;  Weldon, Kelly C.;  Aksenov, Alexander;  da Silva, Ricardo;  Avila-Pacheco, Julian;  Clish, Clary;  Bae, Sena;  Mallick, Himel;  Franzosa, Eric A.;  Lloyd-Price, Jason;  Bussell, Robert;  Thron, Taren;  Nelson, Andrew T.;  Wang, Mingxun;  Leszczynski, Eric;  Vargas, Fernando;  Gauglitz, Julia M.;  Meehan, Michael J.;  Gentry, Emily;  Arthur, Timothy D.;  Komor, Alexis C.;  Poulsen, Orit;  Boland, Brigid S.;  Chang, John T.;  Sandborn, William J.;  Lim, Meerana;  Garg, Neha;  Lumeng, Julie C.;  Xavier, Ramnik J.;  Kazmierczak, Barbara, I;  Jain, Ruchi;  Egan, Marie;  Rhee, Kyung E.;  Ferguson, David;  Raffatellu, Manuela;  Vlamakis, Hera;  Haddad, Gabriel G.;  Siegel, Dionicio;  Huttenhower, Curtis;  Mazmanian, Sarkis K.;  Evans, Ronald M.;  Nizet, Victor;  Knight, Rob;  Dorrestein, Pieter C.
收藏  |  浏览/下载:70/0  |  提交时间:2020/07/03

The ability to communicate quantum information over long distances is of central importance in quantum science and engineering(1). Although some applications of quantum communication such as secure quantum key distribution(2,3) are already being successfully deployed(4-7), their range is currently limited by photon losses and cannot be extended using straightforward measure-and-repeat strategies without compromising unconditional security(8). Alternatively, quantum repeaters(9), which utilize intermediate quantum memory nodes and error correction techniques, can extend the range of quantum channels. However, their implementation remains an outstanding challenge(10-16), requiring a combination of efficient and high-fidelity quantum memories, gate operations, and measurements. Here we use a single solid-state spin memory integrated in a nanophotonic diamond resonator(17-19) to implement asynchronous photonic Bell-state measurements, which are a key component of quantum repeaters. In a proof-of-principle experiment, we demonstrate high-fidelity operation that effectively enables quantum communication at a rate that surpasses the ideal loss-equivalent direct-transmission method while operating at megahertz clock speeds. These results represent a crucial step towards practical quantum repeaters and large-scale quantum networks(20,21).


A solid-state spin memory is used to demonstrate quantum repeater functionality, which has the potential to overcome photon losses involved in long-distance transmission of quantum information.


  
Linear and Weakly Nonlinear Energetics of Global Nonhydrostatic Normal Modes 期刊论文
JOURNAL OF THE ATMOSPHERIC SCIENCES, 2019, 76 (12) : 3831-3846
作者:  Raupp, Carlos F. M.;  Teruya, Andre S. W.;  Silva Dias, Pedro L.
收藏  |  浏览/下载:11/0  |  提交时间:2020/02/17
Dynamics  Inertia-gravity waves  Nonlinear dynamics  Waves  atmospheric  
The genomic history of the Iberian Peninsula over the past 8000 years 期刊论文
SCIENCE, 2019, 363 (6432) : 1230-+
作者:  Olalde, Inigo;  Mallick, Swapan;  Patterson, Nick;  Rohland, Nadin;  Villalba-Mouco, Vanessa;  Silva, Marina;  Dulias, Katharina;  Edwards, Ceiridwen J.;  Gandini, Francesca;  Pala, Maria;  Soares, Pedro;  Ferrando-Bernal, Manuel;  Adamski, Nicole;  Broomandkhoshbacht, Nasreen;  Cheronet, Olivia;  Culleton, Brendan J.;  Fernandes, Daniel;  Lawson, Ann Marie;  Mah, Matthew;  Oppenheimer, Jonas;  Stewardson, Kristin;  Zhang, Zhao;  Arenas, Juan Manuel Jimenez;  Moyano, Isidro Jorge Toro;  Salazar-Garcia, Domingo C.;  Castanyer, Pere;  Santos, Marta;  Tremoleda, Joaquim;  Lozano, Marina;  Borja, Pablo Garcia;  Fernandez-Eraso, Javier;  Mujika-Alustiza, Jose Antonio;  Barroso, Cecilio;  Bermudez, Francisco J.;  Minguez, Enrique Viguera;  Burch, Josep;  Coromina, Neus;  Vivo, David;  Cebria, Artur;  Fullola, Josep Maria;  Garcia-Puchol, Oreto;  Morales, Juan Ignacio;  Oms, F. Xavier;  Majo, Tona;  Verges, Josep Maria;  Diaz-Carvajal, Antonia;  Ollich-Castanyer, Imma;  Lopez-Cachero, F. Javier;  Silva, Ana Maria;  Alonso-Fernandez, Carmen;  De Castro, German Delibes;  Echevarria, Javier Jimenez;  Moreno-Marquez, Adolfo;  Berlanga, Guillermo Pascual;  Ramos-Garcia, Pablo;  Munoz, Jose Ramos;  Vila, Eduardo Vijande;  Arzo, Gustau Aguilella;  Arroyo, Angel Esparza;  Lillios, Katina T.;  Mack, Jennifer;  Velasco-Vazquez, Javier;  Waterman, Anna;  Enrich, Luis Benitez De Lugo;  Sanchez, Maria Benito;  Agusti, Bibiana;  Codina, Ferran;  De Prado, Gabriel;  Estalrrich, Almudena;  Flores, Alvaro Fernandez;  Finlayson, Clive;  Finlayson, Geraldine;  Finlayson, Stewart;  Giles-Guzman, Francisco;  Rosas, Antonio;  Gonzalez, Virginia Barciela;  Atienzar, Gabriel Garcia;  Perez, Mauro S. Hernandez;  Llanos, Armando;  Marco, Yolanda Carrion;  Beneyto, Isabel Collado;  Lopez-Serrano, David;  Tormo, Mario Sanz;  Valera, Antonio C.;  Blasco, Concepcion;  Liesau, Corina;  Rios, Patricia;  Daura, Joan;  de Pedro Micho, Maria Jesus;  Diez-Castillo, Agustin A.;  Fernandez, Raul Flores;  Farre, Joan Frances;  Garrido-Pena, Rafael;  Goncalves, Victor S.;  Guerra-Doce, Elisa;  Herrero-Corral, Ana Mercedes;  Juan-Cabanilles, Joaquim;  Lopez-Reyes, Daniel;  McClure, Sarah B.;  Perez, Marta Merino;  Foix, Arturo Oliver;  Borras, Montserrat Sanz;  Sousa, Ana Catarina;  Encinas, Julio Manuel Vidal;  Kennett, Douglas J.;  Richards, Martin B.;  Alt, Kurt Werner;  Haak, Wolfgang;  Pinhasi, Ron;  Lalueza-Fox, Carles;  Reich, David
收藏  |  浏览/下载:60/0  |  提交时间:2019/11/27
Combining Eucalyptus wood production with the recovery of native tree diversity in mixed plantings: Implications for water use and availability 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 418: 34-40
作者:  Amazonas, Nino Tavares;  Forrester, David I.;  Oliveira, Rafael Silva;  Brancalion, Pedro H. S.
收藏  |  浏览/下载:20/0  |  提交时间:2019/04/09
Atlantic Forest Restoration Pact  Ecophysiology  High diversity mixed plantation  Leaf water potential  Soil volumetric water content  Stomatal conductance