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Structural basis of receptor recognition by SARS-CoV-2 期刊论文
NATURE, 2020, 581 (7807) : 221-+
作者:  Ehrenreich, David;  39;Odorico, Valentina
收藏  |  浏览/下载:28/0  |  提交时间:2020/07/03

A novel severe acute respiratory syndrome (SARS)-like coronavirus (SARS-CoV-2) recently emerged and is rapidly spreading in humans, causing COVID-19(1,2). A key to tackling this pandemic is to understand the receptor recognition mechanism of the virus, which regulates its infectivity, pathogenesis and host range. SARS-CoV-2 and SARS-CoV recognize the same receptor-angiotensin-converting enzyme 2 (ACE2)-in humans(3,4). Here we determined the crystal structure of the receptor-binding domain (RBD) of the spike protein of SARS-CoV-2 (engineered to facilitate crystallization) in complex with ACE2. In comparison with the SARS-CoV RBD, an ACE2-binding ridge in SARS-CoV-2 RBD has a more compact conformation  moreover, several residue changes in the SARS-CoV-2 RBD stabilize two virus-binding hotspots at the RBD-ACE2 interface. These structural features of SARS-CoV-2 RBD increase its ACE2-binding affinity. Additionally, we show that RaTG13, a bat coronavirus that is closely related to SARS-CoV-2, also uses human ACE2 as its receptor. The differences among SARS-CoV-2, SARS-CoV and RaTG13 in ACE2 recognition shed light on the potential animal-to-human transmission of SARS-CoV-2. This study provides guidance for intervention strategies that target receptor recognition by SARS-CoV-2.


  
Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor 期刊论文
NATURE, 2020, 581 (7807) : 215-+
作者:  Goudeau, Jerome;  Samaddar, Madhuja;  Bohnert, K. Adam;  Kenyon, Cynthia
收藏  |  浏览/下载:45/0  |  提交时间:2020/07/03

A new and highly pathogenic coronavirus (severe acute respiratory syndrome coronavirus-2, SARS-CoV-2) caused an outbreak in Wuhan city, Hubei province, China, starting from December 2019 that quickly spread nationwide and to other countries around the world(1-3). Here, to better understand the initial step of infection at an atomic level, we determined the crystal structure of the receptor-binding domain (RBD) of the spike protein of SARS-CoV-2 bound to the cell receptor ACE2. The overall ACE2-binding mode of the SARS-CoV-2 RBD is nearly identical to that of the SARS-CoV RBD, which also uses ACE2 as the cell receptor(4). Structural analysis identified residues in the SARS-CoV-2 RBD that are essential for ACE2 binding, the majority of which either are highly conserved or share similar side chain properties with those in the SARS-CoV RBD. Such similarity in structure and sequence strongly indicate convergent evolution between the SARS-CoV-2 and SARS-CoV RBDs for improved binding to ACE2, although SARS-CoV-2 does not cluster within SARS and SARS-related coronaviruses(1-3,5). The epitopes of two SARS-CoV antibodies that target the RBD are also analysed for binding to the SARS-CoV-2 RBD, providing insights into the future identification of cross-reactive antibodies.


  
A pneumonia outbreak associated with a new coronavirus of probable bat origin 期刊论文
NATURE, 2020, 579 (7798) : 270-+
作者:  Kirchner, James W.;  Berghuijs, Wouter R.;  Allen, Scott T.;  Hrachowitz, Markus;  Hut, Rolf;  Rizzo, Donna M.
收藏  |  浏览/下载:93/0  |  提交时间:2020/07/03

Since the outbreak of severe acute respiratory syndrome (SARS) 18 years ago, a large number of SARS-related coronaviruses (SARSr-CoVs) have been discovered in their natural reservoir host, bats(1-4). Previous studies have shown that some bat SARSr-CoVs have the potential to infect humans(5-7). Here we report the identification and characterization of a new coronavirus (2019-nCoV), which caused an epidemic of acute respiratory syndrome in humans in Wuhan, China. The epidemic, which started on 12 December 2019, had caused 2,794 laboratory-confirmed infections including 80 deaths by 26 January 2020. Full-length genome sequences were obtained from five patients at an early stage of the outbreak. The sequences are almost identical and share 79.6% sequence identity to SARS-CoV. Furthermore, we show that 2019-nCoV is 96% identical at the whole-genome level to a bat coronavirus. Pairwise protein sequence analysis of seven conserved non-structural proteins domains show that this virus belongs to the species of SARSr-CoV. In addition, 2019-nCoV virus isolated from the bronchoalveolar lavage fluid of a critically ill patient could be neutralized by sera from several patients. Notably, we confirmed that 2019-nCoV uses the same cell entry receptor-angiotensin converting enzyme II (ACE2)-as SARS-CoV.


  
A principal component analysis based model to predict post-monsoon tropical cyclone activity in the Bay of Bengal using oceanic Nino index and dipole mode index 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2018, 38 (5) : 2415-2422
作者:  Biswas, H. R.;  Kundu, P. K.
收藏  |  浏览/下载:18/0  |  提交时间:2019/04/09
tropical cyclone  Bay of Bengal  ENSO  ACE  PCR model  
Validation of the MIPAS CO2 volume mixing ratio in the mesosphere and lower thermosphere and comparison with WACCM simulations 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2017, 122 (15)
作者:  Lopez-Puertas, Manuel;  Funke, B.;  Jurado-Navarro, A. A.;  Garcia-Comas, M.;  Gardini, A.;  Boone, C. D.;  Rezac, L.;  Garcia, R. R.
收藏  |  浏览/下载:14/0  |  提交时间:2019/04/09
CO2  mesosphere and lower thermosphere  MIPAS  ACE  SABER  WACCM  
A global enhancement of hydrogen cyanide in the lower stratosphere throughout 2016 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2017, 44 (11)
作者:  Sheese, Patrick E.;  Walker, Kaley A.;  Boone, Chris D.
收藏  |  浏览/下载:13/0  |  提交时间:2019/04/09
ACE-FTS  hydrogen cyanide  upper troposphere-lower stratosphere  biomass burning  El Nino