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Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system 期刊论文
NATURE, 2020, 577 (7789) : 271-+
作者:  Halpin-Healy, Tyler S.;  Klompe, Sanne E.;  Sternberg, Samuel H.;  Fernandez, Israel S.
收藏  |  浏览/下载:21/0  |  提交时间:2020/07/03

Bacteria use adaptive immune systems encoded by CRISPR and Cas genes to maintain genomic integrity when challenged by pathogens and mobile genetic elements(1-3). Type I CRISPR-Cas systems typically target foreign DNA for degradation via joint action of the ribonucleoprotein complex Cascade and the helicase-nuclease Cas3(4,5), but nuclease-deficient type I systems lacking Cas3 have been repurposed for RNA-guided transposition by bacterial Tn7-like transposons(6,7). How CRISPR- and transposon-associated machineries collaborate during DNA targeting and insertion remains unknown. Here we describe structures of a TniQ-Cascade complex encoded by the Vibrio cholerae Tn6677 transposon using cryo-electron microscopy, revealing the mechanistic basis of this functional coupling. The cryo-electron microscopy maps enabled de novo modelling and refinement of the transposition protein TniQ, which binds to the Cascade complex as a dimer in a head-to-tail configuration, at the interface formed by Cas6 and Cas7 near the 3'  end of the CRISPR RNA (crRNA). The natural Cas8-Cas5 fusion protein binds the 5'  crRNA handle and contacts the TniQ dimer via a flexible insertion domain. A target DNA-bound structure reveals critical interactions necessary for protospacer-adjacent motif recognition and R-loop formation. This work lays the foundation for a structural understanding of how DNA targeting by TniQ-Cascade leads to downstream recruitment of additional transposase proteins, and will guide protein engineering efforts to leverage this system for programmable DNA insertions in genome-engineering applications.


  
A Systems-based Tool for Transitioning to Law for a Mutually Enhancing Human-Earth Relationship 期刊论文
ECOLOGICAL ECONOMICS, 2019, 157: 165-174
作者:  Garver, Geoffrey
收藏  |  浏览/下载:12/0  |  提交时间:2019/04/09
Adaptiveness  Assessment framework  Complex adaptive systems  Law  Legal systems  Leverage points  Lock-in  Lock-out  Mutually enhancing human-Earth relationship  Path dependence  
Forest landscapes as social-ecological systems and implications for management 期刊论文
LANDSCAPE AND URBAN PLANNING, 2018, 177: 138-147
作者:  Fischer, Alexandra Paige
收藏  |  浏览/下载:16/0  |  提交时间:2019/04/09
Social-ecological systems  Complex adaptive systems  Forests  Landscapes  Scale mismatch  Governance networks