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A mechanism of ferritin crystallization revealed by cryo-STEM tomography 期刊论文
NATURE, 2020, 579 (7800) : 540-+
作者:  van Gastel, Nick;  Stegen, Steve;  Eelen, Guy;  Schoors, Sandra;  Carlier, Aurelie;  Daniels, Veerle W.;  Baryawno, Ninib;  Przybylski, Dariusz;  Depypere, Maarten;  Stiers, Pieter-Jan;  Lambrechts, Dennis;  Van Looveren, Riet;  Torrekens, Sophie
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/03

Protein crystallization is important in structural biology, disease research and pharmaceuticals. It has recently been recognized that nonclassical crystallization involving initial formation of an amorphous precursor phase-occurs often in protein, organic and inorganic crystallization processes(1-5). A two-step nucleation theory has thus been proposed, in which initial low-density, solvated amorphous aggregates subsequently densify, leading to nucleation(4,6,7). This view differs from classical nucleation theory, which implies that crystalline nuclei forming in solution have the same density and structure as does the final crystalline state(1). A protein crystallization mechanism involving this classical pathway has recently been observed directly(8). However, a molecular mechanism of nonclassical protein crystallization(9-15) has not been established(9,11,14). To determine the nature of the amorphous precursors and whether crystallization takes place within them (and if so, how order develops at the molecular level), three-dimensional (3D) molecular-level imaging of a crystallization process is required. Here we report cryogenic scanning transmission microscopy tomography of ferritin aggregates at various stages of crystallization, followed by 3D reconstruction using simultaneous iterative reconstruction techniques to provide a 3D picture of crystallization with molecular resolution. As crystalline order gradually increased in the studied aggregates, they exhibited an increase in both order and density from their surface towards their interior. We observed no highly ordered small structures typical of a classical nucleation process, and occasionally we observed several ordered domains emerging within one amorphous aggregate, a phenomenon not predicted by either classical or two-step nucleation theories. Our molecular-level analysis hints at desolvation as the driver of the continuous order-evolution mechanism, a view that goes beyond current nucleation models, yet is consistent with a broad spectrum of protein crystallization mechanisms.


  
Observations of grain-boundary phase transformations in an elemental metal 期刊论文
NATURE, 2020, 579 (7799) : 375-+
作者:  Valente, Luis;  Phillimore, Albert B.;  Melo, Martim;  Warren, Ben H.;  Clegg, Sonya M.;  Havenstein, Katja;  Tiedemann, Ralph;  Illera, Juan Carlos;  Thebaud, Christophe;  Aschenbach, Tina;  Etienne, Rampal S.
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

Atomic-resolution observations combined with simulations show that grain boundaries within elemental copper undergo temperature-induced solid-state phase transformation to different structures  grain boundary phases can also coexist and are kinetically trapped structures.


The theory of grain boundary (the interface between crystallites, GB) structure has a long history(1) and the concept of GBs undergoing phase transformations was proposed 50 years ago(2,3). The underlying assumption was that multiple stable and metastable states exist for different GB orientations(4-6). The terminology '  complexion'  was recently proposed to distinguish between interfacial states that differ in any equilibrium thermodynamic property(7). Different types of complexion and transitions between complexions have been characterized, mostly in binary or multicomponent systems(8-19). Simulations have provided insight into the phase behaviour of interfaces and shown that GB transitions can occur in many material systems(20-24). However, the direct experimental observation and transformation kinetics of GBs in an elemental metal have remained elusive. Here we demonstrate atomic-scale GB phase coexistence and transformations at symmetric and asymmetric [111 over bar ] tilt GBs in elemental copper. Atomic-resolution imaging reveals the coexistence of two different structures at sigma 19b GBs (where sigma 19 is the density of coincident sites and b is a GB variant), in agreement with evolutionary GB structure search and clustering analysis(21,25,26). We also use finite-temperature molecular dynamics simulations to explore the coexistence and transformation kinetics of these GB phases. Our results demonstrate how GB phases can be kinetically trapped, enabling atomic-scale room-temperature observations. Our work paves the way for atomic-scale in situ studies of metallic GB phase transformations, which were previously detected only indirectly(9,15,27-29), through their influence on abnormal grain growth, non-Arrhenius-type diffusion or liquid metal embrittlement.


  
Loss of p53 drives neuron reprogramming in head and neck cancer 期刊论文
NATURE, 2020, 578 (7795) : 449-+
作者:  Lipson, Mark;  39;ane
收藏  |  浏览/下载:23/0  |  提交时间:2020/07/03

MicroRNAs from head and neck cancer cells, shuttled to sensory neurons by extracellular vesicles, cause a shift to an adrenergic neuronal phenotype that promotes tumour progression.


The solid tumour microenvironment includes nerve fibres that arise from the peripheral nervous system(1,2). Recent work indicates that newly formed adrenergic nerve fibres promote tumour growth, but the origin of these nerves and the mechanism of their inception are unknown(1,3). Here, by comparing the transcriptomes of cancer-associated trigeminal sensory neurons with those of endogenous neurons in mouse models of oral cancer, we identified an adrenergic differentiation signature. We show that loss of TP53 leads to adrenergic transdifferentiation of tumour-associated sensory nerves through loss of the microRNA miR-34a. Tumour growth was inhibited by sensory denervation or pharmacological blockade of adrenergic receptors, but not by chemical sympathectomy of pre-existing adrenergic nerves. A retrospective analysis of samples from oral cancer revealed that p53 status was associated with nerve density, which was in turn associated with poor clinical outcomes. This crosstalk between cancer cells and neurons represents mechanism by which tumour-associated neurons are reprogrammed towards an adrenergic phenotype that can stimulate tumour progression, and is a potential target for anticancer therapy.


  
Management strategies alter competitive interactions and structural properties of Norway spruce in mixed stands of Bialowieza Forest, Poland 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 437: 87-98
作者:  Erfanifard, Yousef;  Sterenczak, Krzysztof;  Miscicki, Stanislaw
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Density correlation function  Gini coefficient  Management strategy  Old-growth forest  Point pattern analysis  
Predicting coral community recovery using multi-species population dynamics models 期刊论文
ECOLOGY LETTERS, 2019, 22 (4) : 605-615
作者:  Kayal, Mohsen;  Lenihan, Hunter S.;  Brooks, Andrew J.;  Holbrook, Sally J.;  Schmitt, Russell J.;  Kendall, Bruce E.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Community recovery  coral reefs  density dependence  ecosystem function  elasticity analysis  integral projection model  life-history traits  multi-species demographic model  reassembly  size structure  
Topographic Controls on the Extension and Retraction of Flowing Streams 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (4) : 2084-2092
作者:  Prancevic, Jeff P.;  Kirchner, James W.
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
stream networks  drainage density  topographic analysis  
Estimating the Contribution of Local Primary Emissions to Particulate Pollution Using High-Density Station Observations 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2019, 124 (3) : 1648-1661
作者:  Zhao, Chuanfeng;  Wang, Yuan;  Shi, Xiaoqin;  Zhang, Daizhou;  Wang, Chunying;  Jiang, Jonathan H.;  Zhang, Qiang;  Fan, Hao
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
PM2  5  local primary emission  severe haze  high-density stations  spatial-temporal analysis  
Evaluation of Gridded Precipitation Data and Interpolation Methods for Forest Fire Danger Rating in Alberta, Canada 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2019, 124 (1) : 3-17
作者:  Cai, Xinli;  Wang, Xianli;  Jain, Piyush;  Flannigan, Mike D.
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
forest fires  Fire Weather Index System  Canadian Precipitation Analysis System  spatial interpolation  regression kriging  weather station density  
Predicting coral community recovery using multi-species population dynamics models 期刊论文
ECOLOGY LETTERS, 2018, 21 (12) : 1790-1799
作者:  Kayal, Mohsen;  Lenihan, Hunter S.;  Brooks, Andrew J.;  Holbrook, Sally J.;  Schmitt, Russell J.;  Kendall, Bruce E.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Community recovery  coral reefs  density dependence  ecosystem function  elasticity analysis  integral projection model  life-history traits  multi-species demographic model  reassembly  size structure  
A gap in the woods: Wood density knowledge as impediment to develop sustainable use in Atlantic Forest 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 424: 448-457
作者:  Padilha, Danira Leticia;  De Marco Junior, Paulo
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Wood density  Gap analysis  Collection spatial bias  Native species  Brazilian Atlantic Forest