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Somatic inflammatory gene mutations in human ulcerative colitis epithelium 期刊论文
NATURE, 2020, 577 (7789) : 254-+
作者:  Nanki, Kosaku;  Fujii, Masayuki;  Shimokawa, Mariko;  Matano, Mami;  Nishikori, Shingo;  Date, Shoichi;  Takano, Ai;  Toshimitsu, Kohta;  Ohta, Yuki;  Takahashi, Sirirat;  Sugimoto, Shinya;  Ishimaru, Kazuhiro;  Kawasaki, Kenta;  Nagai, Yoko;  Ishii, Ryota;  Yoshida, Kosuke;  Sasaki, Nobuo;  Hibi, Toshifumi;  Ishihara, Soichiro;  Kanai, Takanori;  Sato, Toshiro
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/03

With ageing, normal human tissues experience an expansion of somatic clones that carry cancer mutations(1-7). However, whether such clonal expansion exists in the non-neoplastic intestine remains unknown. Here, using whole-exome sequencing data from 76 clonal human colon organoids, we identify a unique pattern of somatic mutagenesis in the inflamed epithelium of patients with ulcerative colitis. The affected epithelium accumulates somatic mutations in multiple genes that are related to IL-17 signalling-including NFKBIZ, ZC3H12A and PIGR, which are genes that are rarely affected in colon cancer. Targeted sequencing validates the pervasive spread of mutations that are related to IL-17 signalling. Unbiased CRISPR-based knockout screening in colon organoids reveals that the mutations confer resistance to the proapoptotic response that is induced by IL-17A. Some of these genetic mutations are known to exacerbate experimental colitis in mice(8-11), and somatic mutagenesis in human colon epithelium may be causally linked to the inflammatory process. Our findings highlight a genetic landscape that adapts to a hostile microenvironment, and demonstrate its potential contribution to the pathogenesis of ulcerative colitis.


  
Internal state dynamics shape brainwide activity and foraging behaviour 期刊论文
NATURE, 2020, 577 (7789) : 239-+
作者:  Marques, Joao C.;  Li, Meng;  Schaak, Diane;  Robson, Drew N.;  Li, Jennifer M.
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

The brain has persistent internal states that can modulate every aspect of an animal'  s mental experience(1-4). In complex tasks such as foraging, the internal state is dynamic(5-8). Caenorhabditis elegans alternate between local search and global dispersal(5). Rodents and primates exhibit trade-offs between exploitation and exploration(6,7). However, fundamental questions remain about how persistent states are maintained in the brain, which upstream networks drive state transitions and how state-encoding neurons exert neuromodulatory effects on sensory perception and decision-making to govern appropriate behaviour. Here, using tracking microscopy to monitor whole-brain neuronal activity at cellular resolution in freely moving zebrafish larvae(9), we show that zebrafish spontaneously alternate between two persistent internal states during foraging for live prey (Paramecia). In the exploitation state, the animal inhibits locomotion and promotes hunting, generating small, localized trajectories. In the exploration state, the animal promotes locomotion and suppresses hunting, generating long-ranging trajectories that enhance spatial dispersion. We uncover a dorsal raphe subpopulation with persistent activity that robustly encodes the exploitation state. The exploitation-state-encoding neurons, together with a multimodal trigger network that is associated with state transitions, form a stochastically activated nonlinear dynamical system. The activity of this oscillatory network correlates with a global retuning of sensorimotor transformations during foraging that leads to marked changes in both the motivation to hunt for prey and the accuracy of motor sequences during hunting. This work reveals an important hidden variable that shapes the temporal structure of motivation and decision-making.


  
Childhood vaccines and antibiotic use in low- and middle-income countries 期刊论文
NATURE, 2020, 581 (7806) : 94-+
作者:  Louca, Stilianos;  Pennell, Matthew W.
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/03

Vaccines may reduce the burden of antimicrobial resistance, in part by preventing infections for which treatment often includes the use of antibiotics(1-4). However, the effects of vaccination on antibiotic consumption remain poorly understood-especially in low- and middle-income countries (LMICs), where the burden of antimicrobial resistance is greatest(5). Here we show that vaccines that have recently been implemented in the World Health Organization'  s Expanded Programme on Immunization reduce antibiotic consumption substantially among children under five years of age in LMICs. By analysing data from large-scale studies of households, we estimate that pneumococcal conjugate vaccines and live attenuated rotavirus vaccines confer 19.7% (95% confidence interval, 3.4-43.4%) and 11.4% (4.0-18.6%) protection against antibiotic-treated episodes of acute respiratory infection and diarrhoea, respectively, in age groups that experience the greatest disease burden attributable to the vaccine-targeted pathogens(6,7). Under current coverage levels, pneumococcal and rotavirus vaccines prevent 23.8 million and 13.6 million episodes of antibiotic-treated illness, respectively, among children under five years of age in LMICs each year. Direct protection resulting from the achievement of universal coverage targets for these vaccines could prevent an additional 40.0 million episodes of antibiotic-treated illness. This evidence supports the prioritization of vaccines within the global strategy to combat antimicrobial resistance(8).


Pneumococcal and rotavirus vaccines have reduced antibiotic consumption substantially among children under five years old in low- and middle-income countries  however, this effect could be doubled if all countries were to implement vaccination programmes and meet universal vaccine coverage targets.


  
Limits on gas impermeability of graphene 期刊论文
NATURE, 2020, 579 (7798) : 229-+
作者:  Pagano, Justin K.;  Xie, Jing;  Erickson, Karla A.;  Cope, Stephen K.;  Scott, Brian L.;  Wu, Ruilian;  Waterman, Rory;  Morris, David E.;  Yang, Ping;  Gagliardi, Laura;  Kiplinger, Jaqueline L.
收藏  |  浏览/下载:36/0  |  提交时间:2020/07/03

Despite being only one-atom thick, defect-free graphene is considered to be completely impermeable to all gases and liquids(1-10). This conclusion is based on theory(3-8) and supported by experiments(1,9,10) that could not detect gas permeation through micrometre-size membranes within a detection limit of 10(5) to 10(6) atoms per second. Here, using small monocrystalline containers tightly sealed with graphene, we show that defect-free graphene is impermeable with an accuracy of eight to nine orders of magnitude higher than in the previous experiments. We are capable of discerning (but did not observe) permeation of just a few helium atoms per hour, and this detection limit is also valid for all other gases tested (neon, nitrogen, oxygen, argon, krypton and xenon), except for hydrogen. Hydrogen shows noticeable permeation, even though its molecule is larger than helium and should experience a higher energy barrier. This puzzling observation is attributed to a two-stage process that involves dissociation of molecular hydrogen at catalytically active graphene ripples, followed by adsorbed atoms flipping to the other side of the graphene sheet with a relatively low activation energy of about 1.0 electronvolt, a value close to that previously reported for proton transport(11,12). Our work provides a key reference for the impermeability of two-dimensional materials and is important from a fundamental perspective and for their potential applications.


  
How will climate change shape climate opinion? 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2019, 14 (11)
作者:  Howe, Peter D.;  Marlon, Jennifer R.;  Mildenberger, Matto;  Shield, Brittany S.
收藏  |  浏览/下载:15/0  |  提交时间:2020/02/17
perceptions  climate change  personal experience  weather  extreme events  
Personal harm and support for climate change mitigation policies: Evidence from 10 US communities impacted by extreme weather 期刊论文
GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS, 2019, 59
作者:  Zanocco, Chad;  Boudet, Hilary;  Nilson, Roberta;  Flora, June
收藏  |  浏览/下载:22/0  |  提交时间:2020/02/17
Extreme weather events  Climate change policy  Personal experience  Public opinion  
Spatial memory shapes migration and its benefits: evidence from a large herbivore 期刊论文
ECOLOGY LETTERS, 2019, 22 (11) : 1797-1805
作者:  Merkle, Jerod A.;  Sawyer, Hall;  Monteith, Kevin L.;  Dwinnell, Samantha P. H.;  Fralick, Gary L.;  Kauffman, Matthew J.
收藏  |  浏览/下载:18/0  |  提交时间:2019/11/27
Cognitive ecology  habitat selection  migration  movement ecology  mule deer  Odocoileus hemionus  past experience  spatial memory  step selection function  
The influence of spending time outside on experience of nature and environmental attitudes 期刊论文
LANDSCAPE AND URBAN PLANNING, 2019, 187: 96-104
作者:  Colleony, Agathe;  White, Rachel;  Shwartz, Assaf
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Nature experience  Quality  Pet  Environmental knowledge  Nature relatedness  Cross-cultural  
Overcoming prey naivete: Free-living marsupials develop recognition and effective behavioral responses to alien predators in Australia 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (5) : 1685-1695
作者:  Bytheway, Jenna P.;  Banks, Peter B.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/26
adaptation  antipredator behavior  eco-evolutionary experience  invasive alien species  predator recognition  prey naivete  
Childhood Nature Experiences and Adulthood Environmental Preferences 期刊论文
ECOLOGICAL ECONOMICS, 2019, 156: 48-56
作者:  Jensen, Anne Kejser;  Olsen, Soren Boye
收藏  |  浏览/下载:18/0  |  提交时间:2019/04/09
Childhood  Contextual factors  Environmental preferences  Experience  Discrete choice experiment  Water quality