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Somatic inflammatory gene mutations in human ulcerative colitis epithelium 期刊论文
NATURE, 2020, 577 (7789) : 254-+
作者:  Nanki, Kosaku;  Fujii, Masayuki;  Shimokawa, Mariko;  Matano, Mami;  Nishikori, Shingo;  Date, Shoichi;  Takano, Ai;  Toshimitsu, Kohta;  Ohta, Yuki;  Takahashi, Sirirat;  Sugimoto, Shinya;  Ishimaru, Kazuhiro;  Kawasaki, Kenta;  Nagai, Yoko;  Ishii, Ryota;  Yoshida, Kosuke;  Sasaki, Nobuo;  Hibi, Toshifumi;  Ishihara, Soichiro;  Kanai, Takanori;  Sato, Toshiro
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/03

With ageing, normal human tissues experience an expansion of somatic clones that carry cancer mutations(1-7). However, whether such clonal expansion exists in the non-neoplastic intestine remains unknown. Here, using whole-exome sequencing data from 76 clonal human colon organoids, we identify a unique pattern of somatic mutagenesis in the inflamed epithelium of patients with ulcerative colitis. The affected epithelium accumulates somatic mutations in multiple genes that are related to IL-17 signalling-including NFKBIZ, ZC3H12A and PIGR, which are genes that are rarely affected in colon cancer. Targeted sequencing validates the pervasive spread of mutations that are related to IL-17 signalling. Unbiased CRISPR-based knockout screening in colon organoids reveals that the mutations confer resistance to the proapoptotic response that is induced by IL-17A. Some of these genetic mutations are known to exacerbate experimental colitis in mice(8-11), and somatic mutagenesis in human colon epithelium may be causally linked to the inflammatory process. Our findings highlight a genetic landscape that adapts to a hostile microenvironment, and demonstrate its potential contribution to the pathogenesis of ulcerative colitis.


  
Sex-specific adipose tissue imprinting of regulatory T cells 期刊论文
NATURE, 2020, 579 (7800) : 581-+
作者:  Qureshi, Abdul Aziz;  Suades, Albert;  Matsuoka, Rei;  Brock, Joseph;  McComas, Sarah E.;  Nji, Emmanuel;  Orellana, Laura;  Claesson, Magnus;  Delemotte, Lucie;  Drew, David
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

Adipose tissue is an energy store and a dynamic endocrine organ(1,2). In particular, visceral adipose tissue (VAT) is critical for the regulation of systemic metabolism(3,4). Impaired VAT function-for example, in obesity-is associated with insulin resistance and type 2 diabetes(5,6). Regulatory T (T-reg) cells that express the transcription factor FOXP3 are critical for limiting immune responses and suppressing tissue inflammation, including in the VAT(7-9). Here we uncover pronounced sexual dimorphism in T-reg cells in the VAT. Male VAT was enriched for T-reg cells compared with female VAT, and T-reg cells from male VAT were markedly different from their female counterparts in phenotype, transcriptional landscape and chromatin accessibility. Heightened inflammation in the male VAT facilitated the recruitment of T-reg cells via the CCL2-CCR2 axis. Androgen regulated the differentiation of a unique IL-33-producing stromal cell population specific to the male VAT, which paralleled the local expansion of T-reg cells. Sex hormones also regulated VAT inflammation, which shaped the transcriptional landscape of VAT-resident T-reg cells in a BLIMP1 transcription factor-dependent manner. Overall, we find that sex-specific differences in T-reg cells from VAT are determined by the tissue niche in a sex-hormone-dependent manner to limit adipose tissue inflammation.


Visceral adipose tissue contains populations of regulatory T cells that exhibit sexual dimorphism, determined by the surrounding niche, and differ between male and female mice in terms of cell number, phenotype, transcriptional landscape and chromatin accessibility.


  
Extreme streams: species persistence and genomic change in montane insect populations across a flooding gradient 期刊论文
ECOLOGY LETTERS, 2018, 21 (4) : 525-535
作者:  Poff, N. LeRoy;  Larson, Erin I.;  Salerno, Patricia E.;  Morton, Scott G.;  Kondratieff, Boris C.;  Flecker, Alexander S.;  Zamudio, Kelly R.;  Funk, W. Chris
收藏  |  浏览/下载:21/0  |  提交时间:2019/04/09
Disturbance gradient  extreme event  genomic change  landscape vulnerability  population persistence  resilience traits  resistance traits  stream insects  
Habitat suitability is a poor proxy for landscape connectivity during dispersal and mating movements 期刊论文
LANDSCAPE AND URBAN PLANNING, 2017, 161
作者:  Keeley, Annika T. H.;  Beier, Paul;  Keeley, Brian W.;  Fagan, Matthew E.
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
Wildlife corridors  Habitat suitability  Landscape resistance  Landscape connectivity  Dispersal  Mating movements