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Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function 期刊论文
NATURE, 2020, 580 (7805) : 669-+
作者:  Kanarek, Naama;  Petrova, Boryana;  Sabatini, David M.
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/03

Cryo-electron microscopy structures of the DNA-binding domains of the pioneer transcription factor SOX2 and its close homologue SOX11 elucidate the role of these factors in initiating chromatin opening and nucleosome remodelling.


'  Pioneer'  transcription factors are required for stem-cell pluripotency, cell differentiation and cell reprogramming(1,2). Pioneer factors can bind nucleosomal DNA to enable gene expression from regions of the genome with closed chromatin. SOX2 is a prominent pioneer factor that is essential for pluripotency and self-renewal of embryonic stem cells(3). Here we report cryo-electron microscopy structures of the DNA-binding domains of SOX2 and its close homologue SOX11 bound to nucleosomes. The structures show that SOX factors can bind and locally distort DNA at superhelical location 2. The factors also facilitate detachment of terminal nucleosomal DNA from the histone octamer, which increases DNA accessibility. SOX-factor binding to the nucleosome can also lead to a repositioning of the N-terminal tail of histone H4 that includes residue lysine 16. We speculate that this repositioning is incompatible with higher-order nucleosome stacking, which involves contacts of the H4 tail with a neighbouring nucleosome. Our results indicate that pioneer transcription factors can use binding energy to initiate chromatin opening, and thereby facilitate nucleosome remodelling and subsequent transcription.


  
Lipid availability determines fate of skeletal progenitor cells via SOX9 期刊论文
NATURE, 2020
作者:  Obata, Yuuki;  Castano, Alvaro;  Boeing, Stefan;  Bon-Frauches, Ana Carina;  Fung, Candice;  Fallesen, Todd;  De Aguero, Mercedes Gomez;  Yilmaz, Bahtiyar;  Lopes, Rita;  Huseynova, Almaz;  Horswell, Stuart;  Maradana, Muralidhara Rao;  Boesmans, Werend;  Vanden Berghe, Pieter;  Murray, Andrew J.;  Stockinger, Brigitta;  Macpherson, Andrew J.;  Pachnis, Vassilis
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Lipid starvation results in skeletal progenitors favouring commitment to chondrogenic over osteogenic fate, a process mediated by FOXO transcription factors and SOX9.


The avascular nature of cartilage makes it a unique tissue(1-4), but whether and how the absence of nutrient supply regulates chondrogenesis remain unknown. Here we show that obstruction of vascular invasion during bone healing favours chondrogenic over osteogenic differentiation of skeletal progenitor cells. Unexpectedly, this process is driven by a decreased availability of extracellular lipids. When lipids are scarce, skeletal progenitors activate forkhead box O (FOXO) transcription factors, which bind to the Sox9 promoter and increase its expression. Besides initiating chondrogenesis, SOX9 acts as a regulator of cellular metabolism by suppressing oxidation of fatty acids, and thus adapts the cells to an avascular life. Our results define lipid scarcity as an important determinant of chondrogenic commitment, reveal a role for FOXO transcription factors during lipid starvation, and identify SOX9 as a critical metabolic mediator. These data highlight the importance of the nutritional microenvironment in the specification of skeletal cell fate.


  
European Union emission inventory report 1990–2010 under the UNECE Convention on Long-range Transboundary Air Pollution (LRTAP) 科技报告
来源:European Environment Agency (EEA). 出版年: 2012
作者:  [null]
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carbon monoxide  road transport  pm2.5  sox  lrtap  ammonia  long-range transboundary air pollution  nitrogen oxides  mercury  hcb  unece  lead  eu emission inventory  energy production  polycyclic aromatic hydrocarbons  non-road transport  pb  particulat  
European Union emission inventory report 1990–2009 under the UNECE Convention on Long-range Transboundary Air Pollution (LRTAP) 科技报告
来源:European Environment Agency (EEA). 出版年: 2011
作者:  [null]
收藏  |  浏览/下载:13/0  |  提交时间:2019/04/05
PCDD/F  hexachlorobenzene  Pb  PAH  PM2.5  PCB  SOx  road transport  ammonia  transport  nitrogen oxides  mercury  lead  energy production  polycyclic aromatic hydrocarbons  particulate matter  dioxins and furans  industrial production  emission inventory  
Impact of selected policy measures on Europe's air quality 科技报告
来源:European Environment Agency (EEA). 出版年: 2011
作者:  [null]
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Air pollutant emissions  road transport  air quality  air pollution  integrated pollution prevention and control  industrial combustion  NOx  particulate matter  emissions  SOx  policy measures  PM  pollutants  policies  EU air emission policy  
European Union emission inventory report 1990 — 2008 under the UNECE Convention on Long-range Transboundary Air Pollution (LRTAP) 科技报告
来源:European Environment Agency (EEA). 出版年: 2010
作者:  [null]
收藏  |  浏览/下载:3/0  |  提交时间:2019/04/05
air pollutant emissions  PCDD/F  LRTAP convention  hexachlorobenzene  Pb  PAH  PM2.5  industrial processes  PCB  SOx  agriculture  ammonia  dioxins and furans  nitrogen oxides  mercury  EU-27  lead  Gothenburg Protocol  polycyclic aromatic hydrocarbons  p  
European Community emission inventory report 1990-2007 under the UNECE Convention on Long-range Transboundary Air Pollution (LRTAP) 科技报告
来源:European Environment Agency (EEA). 出版年: 2009
作者:  [null]
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/05
air pollutant emissions  CO  PM10  LRTAP convention  PM2.5  NOX  emissions trends and projections  NH3  SOx  long-range transboundary air pollution  
Annual European Community LRTAP Convention emission inventory report 1990-2006 科技报告
来源:European Environment Agency (EEA). 出版年: 2008
作者:  [null]
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/05
SOx  CO  PM10  air pollution  particulate matter  LRTAP convention  ammonia  EU emission inventory  PM2.5  sulphur oxides  NOX  NH3  carbon monoxide  LRTAP  EMEP  nitrogen oxides  
Annual European Community LRTAP Convention Emission Inventory report 1990-2005 科技报告
来源:European Environment Agency (EEA). 出版年: 2007
作者:  [null]
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/05
CO  LRTAP convention  carbon monoxide  non-methane volatile organic compounds  sulphur oxides  NOX  NH3  SOx  LRTAP  ammonia  emission inventory  nitrogen oxides