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Base-pair conformational switch modulates miR-34a targeting of Sirt1 mRNA 期刊论文
NATURE, 2020, 583 (7814) : 139-+
作者:  Muniz, Juan A.;  Barberena, Diego;  Lewis-Swan, Robert J.;  Young, Dylan J.;  Cline, Julia R. K.;  Rey, Ana Maria;  Thompson, James K.
收藏  |  浏览/下载:56/0  |  提交时间:2020/07/03

MicroRNAs (miRNAs) regulate the levels of translation of messenger RNAs (mRNAs). At present, the major parameter that can explain the selection of the target mRNA and the efficiency of translation repression is the base pairing between the '  seed'  region of the miRNA and its counterpart mRNA(1). Here we use R-1 rho relaxation-dispersion nuclear magnetic resonance(2) and molecular simulations(3) to reveal a dynamic switch-based on the rearrangement of a single base pair in the miRNA-mRNA duplex-that elongates a weak five-base-pair seed to a complete seven-base-pair seed. This switch also causes coaxial stacking of the seed and supplementary helix fitting into human Argonaute 2 protein (Ago2), reminiscent of an active state in prokaryotic Ago(4,5). Stabilizing this transient state leads to enhanced repression of the target mRNA in cells, revealing the importance of this miRNA-mRNA structure. Our observations tie together previous findings regarding the stepwise miRNA targeting process from an initial '  screening'  state to an '  active'  state, and unveil the role of the RNA duplex beyond the seed in Ago2.


Repression of a messenger RNA by a cognate microRNA depends not only on complementary base pairing, but also on the rearrangement of a single base pair, producing a conformation that fits better within the human Ago2 protein.


  
Small mammal tree seed selection in mixed forests of the Eastern United States 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 449
作者:  Boone, Sara R.;  Mortelliti, Alessio
收藏  |  浏览/下载:24/0  |  提交时间:2019/11/27
Abies balsamea  Acer rubrum  Betula papyrifera  Multinomial mixed-effects models  Myodes gapperi  Napaeozapus insignis  Peromyscus maniculatus  Picea rubens  Pinus strobus  Quercus rubra  Seed selection  Silvicultural practices  Tamiasciurus hudsonicus  Tsuga canadensis  
Land-use change and the ecological consequences of personality in small mammals 期刊论文
ECOLOGY LETTERS, 2019, 22 (9) : 1387-1395
作者:  Brehm, Allison M.;  Mortelliti, Alessio;  Maynard, George A.;  Zydlewski, Joseph
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Behavioural syndrome  cache site  dispersal distance  individual variation  seed consumption  seed dispersal  seed selection  silvicultural practices  
Variable seed behavior increases recruitment success of a hardwood tree, Zelkova serrata, in spatially heterogeneous forest environments 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 415: 1-9
作者:  Oyama, Hiroki;  Fuse, Osamu;  Tomimatsu, Hiroshi;  Seiwa, Kenji
收藏  |  浏览/下载:12/0  |  提交时间:2019/04/09
Habitat selection  Heterogeneous environments  Jansen-Connell model  Seed dispersal  Slope inclination  
Dispersal and neutral sampling mediate contingent effects of disturbance on plant beta-diversity: a meta-analysis 期刊论文
ECOLOGY LETTERS, 2017, 20 (3)
作者:  Catano, Christopher P.;  Dickson, Timothy L.;  Myers, Jonathan A.
收藏  |  浏览/下载:16/0  |  提交时间:2019/04/09
Biotic homogenisation  community assembly  community size  ecological drift  global change  metacommunity theory  niche selection  null models  seed addition  species pools