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A map of object space in primate inferotemporal cortex 期刊论文
NATURE, 2020, 583 (7814) : 103-+
作者:  Wu, Huihui;  Li, Bosheng;  Iwakawa, Hiro-oki;  Pan, Yajie;  Tang, Xianli;  Ling-hu, Qianyan;  Liu, Yuelin;  Sheng, Shixin;  Feng, Li;  Zhang, Hong;  Zhang, Xinyan;  Tang, Zhonghua;  Xia, Xinli;  Zhai, Jixian;  Guo, Hongwei
收藏  |  浏览/下载:65/0  |  提交时间:2020/07/03

Primate inferotemporal cortex contains a coarse map of object space consisting of four networks, identified using functional imaging, electrophysiology and deep networks.


The inferotemporal (IT) cortex is responsible for object recognition, but it is unclear how the representation of visual objects is organized in this part of the brain. Areas that are selective for categories such as faces, bodies, and scenes have been found(1-5), but large parts of IT cortex lack any known specialization, raising the question of what general principle governs IT organization. Here we used functional MRI, microstimulation, electrophysiology, and deep networks to investigate the organization of macaque IT cortex. We built a low-dimensional object space to describe general objects using a feedforward deep neural network trained on object classification(6). Responses of IT cells to a large set of objects revealed that single IT cells project incoming objects onto specific axes of this space. Anatomically, cells were clustered into four networks according to the first two components of their preferred axes, forming a map of object space. This map was repeated across three hierarchical stages of increasing view invariance, and cells that comprised these maps collectively harboured sufficient coding capacity to approximately reconstruct objects. These results provide a unified picture of IT organization in which category-selective regions are part of a coarse map of object space whose dimensions can be extracted from a deep network.


  
Deciphering human macrophage development at single-cell resolution 期刊论文
NATURE, 2020
作者:  Oberst, Polina;  Fievre, Sabine;  Baumann, Natalia;  Concetti, Cristina;  Bartolini, Giorgia;  Jabaudon, Denis
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Macrophages are the first cells of the nascent immune system to emerge during embryonic development. In mice, embryonic macrophages infiltrate developing organs, where they differentiate symbiotically into tissue-resident macrophages (TRMs)(1). However, our understanding of the origins and specialization of macrophages in human embryos is limited. Here we isolated CD45(+) haematopoietic cells from human embryos at Carnegie stages 11 to 23 and subjected them to transcriptomic profiling by single-cell RNA sequencing, followed by functional characterization of a population of CD45(+)CD34(+)CD44(+) yolk sac-derived myeloid-biased progenitors (YSMPs) by single-cell culture. We also mapped macrophage heterogeneity across multiple anatomical sites and identified diverse subsets, including various types of embryonic TRM (in the head, liver, lung and skin). We further traced the specification trajectories of TRMs from either yolk sac-derived primitive macrophages or YSMP-derived embryonic liver monocytes using both transcriptomic and developmental staging information, with a focus on microglia. Finally, we evaluated the molecular similarities between embryonic TRMs and their adult counterparts. Our data represent a comprehensive characterization of the spatiotemporal dynamics of early macrophage development during human embryogenesis, providing a reference for future studies of the development and function of human TRMs.


Single-cell RNA sequencing of haematopoietic cells from human embryos at different developmental stages sheds light on the development and specification of macrophages in different tissues.


  
Olfactory receptor and circuit evolution promote host specialization 期刊论文
NATURE, 2020
作者:  Chen, Tse-An;  Chuu, Chih-Piao;  Tseng, Chien-Chih;  Wen, Chao-Kai;  Wong, H. -S. Philip;  Pan, Shuangyuan;  Li, Rongtan;  Chao, Tzu-Ang;  Chueh, Wei-Chen;  Zhang, Yanfeng;  Fu, Qiang;  Yakobson, Boris I.;  Chang, Wen-Hao;  Li, Lain-Jong
收藏  |  浏览/下载:27/0  |  提交时间:2020/07/03

The evolution of animal behaviour is poorly understood(1,2). Despite numerous correlations between interspecific divergence in behaviour and nervous system structure and function, demonstrations of the genetic basis of these behavioural differences remain rare(3-5). Here we develop a neurogenetic model, Drosophila sechellia, a species that displays marked differences in behaviour compared to its close cousin Drosophila melanogaster(6,7), which are linked to its extreme specialization on noni fruit (Morinda citrifolia)(8-16). Using calcium imaging, we identify olfactory pathways in D. sechellia that detect volatiles emitted by the noni host. Our mutational analysis indicates roles for different olfactory receptors in long- and short-range attraction to noni, and our cross-species allele-transfer experiments demonstrate that the tuning of one of these receptors is important for species-specific host-seeking. We identify the molecular determinants of this functional change, and characterize their evolutionary origin and behavioural importance. We perform circuit tracing in the D. sechellia brain, and find that receptor adaptations are accompanied by increased sensory pooling onto interneurons as well as species-specific central projection patterns. This work reveals an accumulation of molecular, physiological and anatomical traits that are linked to behavioural divergence between species, and defines a model for investigating speciation and the evolution of the nervous system.


A neurogenetic model, Drosophila sechellia-a relative of Drosophila melanogaster that has developed an extreme specialization for a single host plant-sheds light on the evolution of interspecific differences in behaviour.


  
Bacterial coexistence driven by motility and spatial competition 期刊论文
NATURE, 2020, 578 (7796) : 588-+
作者:  Micke, P.;  Leopold, T.;  King, S. A.;  Benkler, E.;  Spiess, L. J.;  Schmoeger, L.;  Schwarz, M.;  Crespo Lopez-Urrutia, J. R.;  Schmidt, P. O.
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

Elucidating elementary mechanisms that underlie bacterial diversity is central to ecology(1,2) and microbiome research(3). Bacteria are known to coexist by metabolic specialization(4), cooperation(5) and cyclic warfare(6-8). Many species are also motile(9), which is studied in terms of mechanism(10,11), benefit(12,13), strategy(14,15), evolution(16,17) and ecology(18,19). Indeed, bacteria often compete for nutrient patches that become available periodically or by random disturbances(2,20,21). However, the role of bacterial motility in coexistence remains unexplored experimentally. Here we show that-for mixed bacterial populations that colonize nutrient patches-either population outcompetes the other when low in relative abundance. This inversion of the competitive hierarchy is caused by active segregation and spatial exclusion within the patch: a small fast-moving population can outcompete a large fast-growing population by impeding its migration into the patch, while a small fast-growing population can outcompete a large fast-moving population by expelling it from the initial contact area. The resulting spatial segregation is lost for weak growth-migration trade-offs and a lack of virgin space, but is robust to population ratio, density and chemotactic ability, and is observed in both laboratory and wild strains. These findings show that motility differences and their trade-offs with growth are sufficient to promote diversity, and suggest previously undescribed roles for motility in niche formation and collective expulsion-containment strategies beyond individual search and survival.


In mixed bacterial populations that colonize nutrient patches, a growth-migration trade-off can lead to spatial exclusion that provides an advantage to populations that become rare, thereby stabilizing the community.


  
Carbon efficiency and international specialization position: Evidence from global value chain position index of manufacture 期刊论文
ENERGY POLICY, 2019, 128: 235-242
作者:  Sun, Chuanwang;  Li, Zhi;  Ma, Tiemeng;  He, Runyong
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/26
Carbon efficiency  International specialization  GVC position index  
Standard Ecological Footprint Method for Small, Highly Specialized Economies 期刊论文
ECOLOGICAL ECONOMICS, 2018, 146: 370-380
作者:  Johannesson, S. E.;  Daviosdottir, B.;  Heinonen, J. T.
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
Ecological Footprint  Sustainability  Economic specialization  
Habitat connectivity affects specialist species richness more than generalists in veteran trees 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 403
作者:  Sverdrup-Thygeson, Anne;  Skarpaas, Olav;  Blumentrath, Stefan;  Birkemoe, Tone;  Evju, Marianne
收藏  |  浏览/下载:14/0  |  提交时间:2019/04/09
Connectivity  Coleoptera  Veteran trees  Quercus spp.  Spatial scale  Specialization  
Towards a New Conceptualization of Innovation in Space: Territorial Patterns of Innovation 期刊论文
INTERNATIONAL JOURNAL OF URBAN AND REGIONAL RESEARCH, 2017, 41 (6)
作者:  Capello, Roberta
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
regional innovation patterns  R&D  smart specialization policies  
Effect of N addition on home-field advantage of litter decomposition in subtropical forests 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 398
作者:  Lin, Hong;  He, Zaihua;  Hao, Jiewei;  Tian, Kai;  Jia, Xiuqin;  Kong, Xiangshi;  Akbar, Siddiq;  Bei, Zhanlin;  Tian, Xingjun
收藏  |  浏览/下载:13/0  |  提交时间:2019/04/09
Home-field advantage  Litter decomposition  Subtropical forests  Specialization  Nitrogen cycling  
Landscape simplification weakens the association between terrestrial producer and consumer diversity in Europe 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (8)
作者:  Dainese, Matteo;  Isaac, Nick J. B.;  Powney, Gary D.;  Bommarco, Riccardo;  Ockinger, Erik;  Kuussaari, Mikko;  Poyry, Juha;  Benton, Tim G.;  Gabriel, Doreen;  Hodgson, Jenny A.;  Kunin, William E.;  Lindborg, Regina;  Sait, Steven M.;  Marini, Lorenzo
收藏  |  浏览/下载:21/0  |  提交时间:2019/04/09
coevolution  ecosystem resilience  functional traits  habitat loss  herbivory  host specialization  land-use change  phylogenetic diversity  plant-insect interactions  trophic associations