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The emergent interactions that govern biodiversity change 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (29) : 17074-17083
作者:  Clark, James S.;  Scher, C. Lane;  Swift, Margaret
收藏  |  浏览/下载:46/0  |  提交时间:2020/07/09
food web dynamics  species interactions  GJAM  climate change  
Direct evidence of poison-driven widespread population decline in a wild vertebrate 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (28) : 16418-16423
作者:  Mateo-Tomas, Patricia;  Olea, Pedro P.;  Minguez, Eva;  Mateo, Rafael;  Vinuela, Javier
收藏  |  浏览/下载:58/0  |  提交时间:2020/07/06
wildlife poisoning  population dynamics  sentinel species  on-ground monitoring  diclofenac  
Nearest neighbours reveal fast and slow components of motor learning 期刊论文
NATURE, 2020, 577 (7791) : 526-+
作者:  Kollmorgen, Sepp;  Hahnloser, Richard H. R.;  Mante, Valerio
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

A new method for analysing change in high-dimensional data is based on nearest-neighbour statistics and is applied here to song dynamics during vocal learning in zebra finches, but could potentially be applied to other biological and artificial behaviours.


Changes in behaviour resulting from environmental influences, development and learning(1-5) are commonly quantified on the basis of a few hand-picked features(2-4,6,7) (for example, the average pitch of acoustic vocalizations(3)), assuming discrete classes of behaviours (such as distinct vocal syllables)(2,3,8-10). However, such methods generalize poorly across different behaviours and model systems and may miss important components of change. Here we present a more-general account of behavioural change that is based on nearest-neighbour statistics(11-13), and apply it to song development in a songbird, the zebra finch(3). First, we introduce the concept of '  repertoire dating'  , whereby each rendition of a behaviour (for example, each vocalization) is assigned a repertoire time, reflecting when similar renditions were typical in the behavioural repertoire. Repertoire time isolates the components of vocal variability that are congruent with long-term changes due to vocal learning and development, and stratifies the behavioural repertoire into '  regressions'  , '  anticipations'  and '  typical renditions'  . Second, we obtain a holistic, yet low-dimensional, description of vocal change in terms of a stratified '  behavioural trajectory'  , revealing numerous previously unrecognized components of behavioural change on fast and slow timescales, as well as distinct patterns of overnight consolidation(1,2,4,14,15) across the behavioral repertoire. We find that diurnal changes in regressions undergo only weak consolidation, whereas anticipations and typical renditions consolidate fully. Because of its generality, our nonparametric description of how behaviour evolves relative to itself-rather than to a potentially arbitrary, experimenter-defined goal(2,3,14,16)-appears well suited for comparing learning and change across behaviours and species(17,18), as well as biological and artificial systems(5).


  
How community adaptation affects biodiversity-ecosystem functioning relationships 期刊论文
ECOLOGY LETTERS, 2020, 23 (8) : 1263-1275
作者:  Aubree, Flora;  David, Patrice;  Jarne, Philippe;  Loreau, Michel;  Mouquet, Nicolas;  Calcagno, Vincent
收藏  |  浏览/下载:20/0  |  提交时间:2020/06/01
Adaptive dynamics  eco-evolutionary dynamics  invasion  productivity  species interactions  species traits  stability  
Disease hotspots or hot species? Infection dynamics in multi-host metacommunities controlled by species identity, not source location 期刊论文
ECOLOGY LETTERS, 2020, 23 (8) : 1201-1211
作者:  Wilber, Mark Q.;  Johnson, Pieter T. J.;  Briggs, Cheryl J.
收藏  |  浏览/下载:24/0  |  提交时间:2020/05/13
Batrachochytrium dendrobatidis  chytrid fungus  endemic  hotspots  maintenance species  metacommunity  metapopulaton  Pseudacris regilla  reservoir species  source-sink dynamics  
The online competition between pro- and anti-vaccination views 期刊论文
NATURE, 2020, 582 (7811) : 230-+
作者:  Wu, Fan;  Zhao, Su;  Yu, Bin;  Chen, Yan-Mei;  Wang, Wen;  Song, Zhi-Gang;  Hu, Yi;  Tao, Zhao-Wu;  Tian, Jun-Hua;  Pei, Yuan-Yuan;  Yuan, Ming-Li;  Zhang, Yu-Ling;  Dai, Fa-Hui;  Liu, Yi;  Wang, Qi-Min;  Zheng, Jiao-Jiao;  Xu, Lin;  Holmes, Edward C.;  Zhang, Yong-Zhen
收藏  |  浏览/下载:37/0  |  提交时间:2020/07/03

Insights into the interactions between pro- and anti-vaccination clusters on Facebook can enable policies and approaches that attempt to interrupt the shift to anti-vaccination views and persuade undecided individuals to adopt a pro-vaccination stance.


Distrust in scientific expertise(1-14) is dangerous. Opposition to vaccination with a future vaccine against SARS-CoV-2, the causal agent of COVID-19, for example, could amplify outbreaks(2-4), as happened for measles in 2019(5,6). Homemade remedies(7,8) and falsehoods are being shared widely on the Internet, as well as dismissals of expert advice(9-11). There is a lack of understanding about how this distrust evolves at the system level(13,14). Here we provide a map of the contention surrounding vaccines that has emerged from the global pool of around three billion Facebook users. Its core reveals a multi-sided landscape of unprecedented intricacy that involves nearly 100 million individuals partitioned into highly dynamic, interconnected clusters across cities, countries, continents and languages. Although smaller in overall size, anti-vaccination clusters manage to become highly entangled with undecided clusters in the main online network, whereas pro-vaccination clusters are more peripheral. Our theoretical framework reproduces the recent explosive growth in anti-vaccination views, and predicts that these views will dominate in a decade. Insights provided by this framework can inform new policies and approaches to interrupt this shift to negative views. Our results challenge the conventional thinking about undecided individuals in issues of contention surrounding health, shed light on other issues of contention such as climate change(11), and highlight the key role of network cluster dynamics in multi-species ecologies(15).


  
Extant timetrees are consistent with a myriad of diversification histories 期刊论文
NATURE, 2020, 580 (7804) : 502-+
作者:  Bhaskar, M. K.;  Riedinger, R.;  Machielse, B.;  Levonian, D. S.;  Nguyen, C. T.;  Knall, E. N.;  Park, H.;  Englund, D.;  Loncar, M.;  Sukachev, D. D.;  Lukin, M. D.
收藏  |  浏览/下载:37/0  |  提交时间:2020/07/03

An infinite number of alternative diversification scenarios-which may have markedly different, but equally plausible, dynamics-can underpin a given time-calibrated phylogeny of extant species, suggesting many previous studies have over-interpreted phylogenetic evidence.


Time-calibrated phylogenies of extant species (referred to here as '  extant timetrees'  ) are widely used for estimating diversification dynamics(1). However, there has been considerable debate surrounding the reliability of these inferences(2-5) and, to date, this critical question remains unresolved. Here we clarify the precise information that can be extracted from extant timetrees under the generalized birth-death model, which underlies most existing methods of estimation. We prove that, for any diversification scenario, there exists an infinite number of alternative diversification scenarios that are equally likely to have generated any given extant timetree. These '  congruent'  scenarios cannot possibly be distinguished using extant timetrees alone, even in the presence of infinite data. Importantly, congruent diversification scenarios can exhibit markedly different and yet similarly plausible dynamics, which suggests that many previous studies may have over-interpreted phylogenetic evidence. We introduce identifiable and easily interpretable variables that contain all available information about past diversification dynamics, and demonstrate that these can be estimated from extant timetrees. We suggest that measuring and modelling these identifiable variables offers a more robust way to study historical diversification dynamics. Our findings also make it clear that palaeontological data will continue to be crucial for answering some macroevolutionary questions.


  
Maintaining historic disturbance regimes increases species' resilience to catastrophic hurricanes 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Henry, Erica H.;  Reiskind, Martha O. Burford;  Land, Aerin D.;  Haddad, Nick M.
收藏  |  浏览/下载:31/0  |  提交时间:2020/02/17
butterfly  conservation  endangered species  habit restoration  hurricane  population dynamics  
Genes on the edge: A framework to detect genetic diversity imperiled by climate change 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (12) : 4034-4047
作者:  Carvalho, Silvia Benoliel;  Torres, Joao;  Tarroso, Pedro;  Velo-Anton, Guillermo
收藏  |  浏览/下载:20/0  |  提交时间:2020/02/17
leading edge  nucleotide diversity  phylin  range dynamics  species distribution models  trailing edge  
Spatio-temporal dynamics of seedling communities are determined by seed input and habitat filtering in a subtropical montane forest 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 449
作者:  Xu, Yaozhan;  Wan, Dan;  Xiao, Zhiqiang;  Wu, Hao;  Jiang, Mingxi
收藏  |  浏览/下载:21/0  |  提交时间:2019/11/27
Species turnover  Species reordering  Species richness  Directional change  Habitat filtering  Forest dynamics plot