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A metabolic pathway for bile acid dehydroxylation by the gut microbiome 期刊论文
NATURE, 2020
作者:  Zhong, Miao;  Tran, Kevin;  Min, Yimeng;  Wang, Chuanhao;  Wang, Ziyun;  Dinh, Cao-Thang;  De Luna, Phil;  Yu, Zongqian;  Rasouli, Armin Sedighian;  Brodersen, Peter;  Sun, Song;  Voznyy, Oleksandr;  Tan, Chih-Shan;  Askerka, Mikhail;  Che, Fanglin;  Liu, Min;  Seifitokaldani, Ali;  Pang, Yuanjie;  Lo, Shen-Chuan;  Ip, Alexander;  Ulissi, Zachary;  Sargent, Edward H.
收藏  |  浏览/下载:45/0  |  提交时间:2020/07/03

The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice-an important proof-of-principle for the engineering of gut microbial pathways.


The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 mu M and are known to block the growth ofClostridium difficile(1), promote hepatocellular carcinoma(2)and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.(3)). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids(4)  the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A-B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe-S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway intoClostridium sporogenes, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.


  
Ruthenium isotope vestige of Earth's pre-late-veneer mantle preserved in Archaean rocks 期刊论文
NATURE, 2020, 579 (7798) : 240-+
作者:  Abadie, Valerie;  Kim, Sangman M.;  Lejeune, Thomas;  Palanski, Brad A.;  Ernest, Jordan D.;  Tastet, Olivier;  Voisine, Jordan;  Discepolo, Valentina;  Marietta, Eric, V;  Hawash, Mohamed B. F.;  Ciszewski, Cezary;  Bouziat, Romain;  Panigrahi, Kaushik;  Horwath, Irina;  Zurenski, Matthew A.;  Lawrence, Ian;  Dumaine, Anne;  Yotova, Vania;  Grenier, Jean-Christophe;  Murray, Joseph A.;  Khosla, Chaitan;  Barreiro, Luis B.;  Jabri, Bana
收藏  |  浏览/下载:45/0  |  提交时间:2020/05/13

The accretion of volatile-rich material from the outer Solar System represents a crucial prerequisite for Earth to develop oceans and become a habitable planet(1-4). However, the timing of this accretion remains controversial(5-8). It has been proposed that volatile elements were added to Earth by the late accretion of a late veneer consisting of carbonaceous-chondrite-like material after core formation had ceased(6,9,10). This view could not be reconciled with the ruthenium (Ru) isotope composition of carbonaceous chondrites(5,11), which is distinct from that of the modern mantle(12), or of any known meteorite group(5). As a possible solution, Earth'  s pre-late-veneer mantle could already have contained a fraction of Ru that was not fully extracted by core formation(13). The presence of such pre-late-veneer Ru can only be established if its isotope composition is distinct from that of the modern mantle. Here we report the first high-precision, mass-independent Ru isotope compositions for Eoarchaean ultramafic rocks from southwest Greenland, which display a relative Ru-100 excess of 22 parts per million compared with the modern mantle value. This Ru-100 excess indicates that the source of the Eoarchaean rocks already contained a substantial fraction of Ru before the accretion of the late veneer. By 3.7 billion years ago, the mantle beneath southwest Greenland had not yet fully equilibrated with late accreted material. Otherwise, no Ru isotopic difference relative to the modern mantle would be observed. If constraints from other highly siderophile elements besides Ru are also considered(14), the composition of the modern mantle can only be reconciled if the late veneer contained substantial amounts of carbonaceous-chondrite-like materials with their characteristic Ru-100 deficits. These data therefore relax previous constraints on the late veneer and are consistent with volatile-rich material from the outer Solar System being delivered to Earth during late accretion.


  
Phase Stability and Thermal Equation of State of Iron Carbide Fe3C to 245 GPa 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019
作者:  Hu, Xiaojun;  Fei, Yingwei;  Yang, Jing;  Cai, Yang;  Ye, Shijia;  Qi, Meilan;  Liu, Fusheng;  Zhang, Mingjian
收藏  |  浏览/下载:24/0  |  提交时间:2019/11/27
Earth core  shockwave compression  iron carbide  core density  core composition  
Evidence for Fe-Si-O liquid immiscibility at deep Earth pressures 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (21) : 10238-10243
作者:  Arveson, Sarah M.;  Deng, Jie;  Karki, Bijaya B.;  Lee, Kanani K. M.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
high pressure  melting  alloys  core composition  
Microscopic Observations of Core-Shell Particle Structure and Implications for Atmospheric Aerosol Remote Sensing 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2018, 123 (24) : 13944-13962
作者:  Unga, Florin;  Choel, Marie;  Derimian, Yevgeny;  Deboudt, Karine;  Dubovik, Oleg;  Goloub, Philippe
收藏  |  浏览/下载:26/0  |  提交时间:2019/04/09
optical properties of core-shell aerosol particles  core-shell aerosols parameterization in remote sensing algorithms  microphysical properties and chemical composition of aerosols  urban pollution  desert dust  TEM  EDX