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Selective loading and processing of prespacers for precise CRISPR adaptation 期刊论文
NATURE, 2020
作者:  Liu, Guoxia;  Papa, Arianne;  Katchman, Alexander N.;  Zakharov, Sergey I.;  Roybal, Daniel;  Hennessey, Jessica A.;  Kushner, Jared;  Yang, Lin;  Chen, Bi-Xing;  Kushnir, Alexander;  Dangas, Katerina;  Gygi, Steven P.;  Pitt, Geoffrey S.;  Colecraft, Henry M.;  Ben-Johny, Manu;  Kalocsay, Marian;  Marx, Steven O.
收藏  |  浏览/下载:23/0  |  提交时间:2020/07/03

CRISPR-Cas immunity protects prokaryotes against invading genetic elements(1). It uses the highly conserved Cas1-Cas2 complex to establish inheritable memory (spacers)(2-5). How Cas1-Cas2 acquires spacers from foreign DNA fragments (prespacers) and integrates them into the CRISPR locus in the correct orientation is unclear(6,7). Here, using the high spatiotemporal resolution of single-molecule fluorescence, we show that Cas1-Cas2 selects precursors of prespacers from DNA in various forms-including single-stranded DNA and partial duplexes-in a manner that depends on both the length of the DNA strand and the presence of a protospacer adjacent motif (PAM) sequence. We also identify DnaQ exonucleases as enzymes that process the Cas1-Cas2-loaded prespacer precursors into mature prespacers of a suitable size for integration. Cas1-Cas2 protects the PAM sequence from maturation, which results in the production of asymmetrically trimmed prespacers and the subsequent integration of spacers in the correct orientation. Our results demonstrate the kinetic coordination of prespacer precursor selection and PAM trimming, providing insight into the mechanisms that underlie the integration of functional spacers in the CRISPR loci.


Cas1-Cas2 selects precursor prespacers from DNA fragments in a length- and PAM-sequence-dependent manner, and these precursors are trimmed by DnaQ exonucleases to enable integration into the CRISPR locus in the correct orientation.


  
Heterogeneous integration of single-crystalline complex-oxide membranes 期刊论文
NATURE, 2020, 578 (7793) : 75-+
作者:  Vaks, A.;  Mason, A. J.;  Breitenbach, S. F. M.;  Kononov, A. M.;  Osinzev, A. V.;  Rosensaft, M.;  Borshevsky, A.;  Gutareva, O. S.;  Henderson, G. M.
收藏  |  浏览/下载:49/0  |  提交时间:2020/07/03

Complex-oxide materials exhibit a vast range of functional properties desirable for next-generation electronic, spintronic, magnetoelectric, neuromorphic, and energy conversion storage devices(1-4). Their physical functionalities can be coupled by stacking layers of such materials to create heterostructures and can be further boosted by applying strain(5-7). The predominant method for heterogeneous integration and application of strain has been through heteroepitaxy, which drastically limits the possible material combinations and the ability to integrate complex oxides with mature semiconductor technologies. Moreover, key physical properties of complex-oxide thin films, such as piezoelectricity and magnetostriction, are severely reduced by the substrate clamping effect. Here we demonstrate a universal mechanical exfoliation method of producing freestanding single-crystalline membranes made from a wide range of complex-oxide materials including perovskite, spinel and garnet crystal structures with varying crystallographic orientations. In addition, we create artificial heterostructures and hybridize their physical properties by directly stacking such freestanding membranes with different crystal structures and orientations, which is not possible using conventional methods. Our results establish a platform for stacking and coupling three-dimensional structures, akin to two-dimensional material-based heterostructures, for enhancing device functionalities(8,9).


  
Non-consumptive effects of predation: does perceived risk strengthen the genetic integration of behaviour and morphology in stickleback? 期刊论文
ECOLOGY LETTERS, 2019
作者:  Dingemanse, Niels J.;  Barber, Iain;  Dochtermann, Ned A.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
Behavioural ecology  evolutionary characters  functional integration  G-matrix evolution  gene-environment interactions  modularity  morphology  personality  plasticity integration  predation