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Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition 期刊论文
NATURE, 2020, 577 (7790) : 421-+
作者:  Xue, Jenny Y.;  Zhao, Yulei;  Aronowitz, Jordan;  Mai, Trang T.;  Vides, Alberto;  Qeriqi, Besnik;  Kim, Dongsung;  Li, Chuanchuan;  de Stanchina, Elisa;  Mazutis, Linas;  Risso, Davide;  Lito, Piro
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

KRAS GTPases are activated in one-third of cancers, and KRAS(G12C) is one of the most common activating alterations in lung adenocarcinoma(1,2). KRAS(G12C) inhibitors(3,4) are in phase-I clinical trials and early data show partial responses in nearly half of patients with lung cancer. How cancer cells bypass inhibition to prevent maximal response to therapy is not understood. Because KRAS(G12C) cycles between an active and inactive conformation(4-6), and the inhibitors bind only to the latter, we tested whether isogenic cell populations respond in a non-uniform manner by studying the effect of treatment at a single-cell resolution. Here we report that, shortly after treatment, some cancer cells are sequestered in a quiescent state with low KRAS activity, whereas others bypass this effect to resume proliferation. This rapid divergent response occurs because some quiescent cells produce new KRAS(G12C) in response to suppressed mitogen-activated protein kinase output. New KRAS(G12C) is maintained in its active, drug-insensitive state by epidermal growth factor receptor and aurora kinase signalling. Cells without these adaptive changes-or cells in which these changes are pharmacologically inhibited-remain sensitive to drug treatment, because new KRAS(G12C) is either not available or exists in its inactive, drug-sensitive state. The direct targeting of KRAS oncoproteins has been a longstanding objective in precision oncology. Our study uncovers a flexible non-uniform fitness mechanism that enables groups of cells within a population to rapidly bypass the effect of treatment. This adaptive process must be overcome if we are to achieve complete and durable responses in the clinic.


  
Microbial bile acid metabolites modulate gut ROR gamma(+) regulatory T cell homeostasis 期刊论文
NATURE, 2020, 577 (7790) : 410-+
作者:  Bhargava, Manjul
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

The metabolic pathways encoded by the human gut microbiome constantly interact with host gene products through numerous bioactive molecules(1). Primary bile acids (BAs) are synthesized within hepatocytes and released into the duodenum to facilitate absorption of lipids or fat-soluble vitamins(2). Some BAs (approximately 5%) escape into the colon, where gut commensal bacteria convert them into various intestinal BAs2 that are important hormones that regulate host cholesterol metabolism and energy balance via several nuclear receptors and/or G-protein-coupled receptors(3,4). These receptors have pivotal roles in shaping host innate immune responses(1,5). However, the effect of this host-microorganism biliary network on the adaptive immune system remains poorly characterized. Here we report that both dietary and microbial factors influence the composition of the gut BA pool and modulate an important population of colonic FOXP3(+) regulatory T (T-reg) cells expressing the transcription factor ROR gamma. Genetic abolition of BA metabolic pathways in individual gut symbionts significantly decreases this T-reg cell population. Restoration of the intestinal BA pool increases colonic ROR gamma(+) T-reg cell counts and ameliorates host susceptibility to inflammatory colitis via BA nuclear receptors. Thus, a pan-genomic biliary network interaction between hosts and their bacterial symbionts can control host immunological homeostasis via the resulting metabolites.


  
A positively selected FBN1 missense variant reduces height in Peruvian individuals 期刊论文
NATURE, 2020, 582 (7811) : 234-+
作者:  Bedford, Jonathan R.;  Moreno, Marcos;  Deng, Zhiguo;  Oncken, Onno;  Schurr, Bernd;  John, Timm;  Baez, Juan Carlos;  Bevis, Michael
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/03

On average, Peruvian individuals are among the shortest in the world(1). Here we show that Native American ancestry is associated with reduced height in an ethnically diverse group of Peruvian individuals, and identify a population-specific, missense variant in the FBN1 gene (E1297G) that is significantly associated with lower height. Each copy of the minor allele (frequency of 4.7%) reduces height by 2.2 cm (4.4 cm in homozygous individuals). To our knowledge, this is the largest effect size known for a common height-associated variant. FBN1 encodes the extracellular matrix protein fibrillin 1, which is a major structural component of microfibrils. We observed less densely packed fibrillin-1-rich microfibrils with irregular edges in the skin of individuals who were homozygous for G1297 compared with individuals who were homozygous for E1297. Moreover, we show that the E1297G locus is under positive selection in non-African populations, and that the E1297 variant shows subtle evidence of positive selection specifically within the Peruvian population. This variant is also significantly more frequent in coastal Peruvian populations than in populations from the Andes or the Amazon, which suggests that short stature might be the result of adaptation to factors that are associated with the coastal environment in Peru.


In an ethnically diverse group of Peruvian individuals, the population-specific, missense variant in FBN1 (E1297G) is associated with lower height and shows evidence of positive selection within the Peruvian population.


  
Genetic drift in range expansions is very sensitive to density dependence in dispersal and growth 期刊论文
ECOLOGY LETTERS, 2019, 22 (11) : 1817-1827
作者:  Gabriel Birzu;  Matin, Sakib;  Hallatschek, Oskar;  Korolev, Kirill S.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
Allee effect  demographic fluctuations  density dependence  diversity loss  founder effect  genetic drift  population pressure  pulled invasions  pushed invasions  reaction-diffusion  
Temporal scale of environmental correlations affects ecological synchrony 期刊论文
ECOLOGY LETTERS, 2018, 21 (12) : 1800-1811
作者:  Desharnais, Robert A.;  Reuman, Daniel C.;  Costantino, Robert F.;  Cohen, Joel E.
收藏  |  浏览/下载:16/0  |  提交时间:2019/04/09
Ecological synchrony  environmental correlations  metapopulations  microcosm experiments  Moran effect  population dispersal  spectral analysis  Tribolium  
Effects of salmon lice on sea trout. A litterature review 科技报告
来源:Center for International Climate and Environmental Research-Oslo (CICERO). 出版年: 2014
作者:  Thorstad, Eva Bonsak;  Todd, Christopher D.;  Bjørn, Pål Arne;  Gargan, Patrick G.;  Vollset, Knut Wiik;  Halttunen, Elina;  Kålås, Steinar;  Uglem, Ingebrigt;  Berg, Marius;  Finstad, Bengt
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/05
NINA Rapport  salmon lice  Lepeophteirus salmonis  parasite  infestation  sea trout  Salmo trutta  anadromous salmonid  literature review  knowledge status  aquaculture  salmon farming  fish farming  life history  marine migration  physiology  growth  mortality  population effect