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Tree mode of death and mortality risk factors across Amazon forests 期刊论文
Nature Communications, 2020
作者:  Adriane Esquivel-Muelbert;  Oliver L. Phillips;  Roel J. W. Brienen;  Sophie Fauset;  Martin J. P. Sullivan;  Timothy R. Baker;  Kuo-Jung Chao;  Ted R. Feldpausch;  Emanuel Gloor;  Niro Higuchi;  Jeanne Houwing-Duistermaat;  Jon Lloyd;  Haiyan Liu;  Yadvinder Malhi;  Beatriz Marimon;  Ben Hur Marimon Junior;  Abel Monteagudo-Mendoza;  Lourens Poorter;  Marcos Silveira;  Emilio Vilanova Torre;  Esteban Alvarez Dá;  vila;  Jhon del Aguila Pasquel;  Everton Almeida;  Patricia Alvarez Loayza;  Ana Andrade;  Luiz E. O. C. Aragã;  o;  Alejandro Araujo-Murakami;  Eric Arets;  Luzmila Arroyo;  Gerardo A. Aymard C.;  Michel Baisie;  Christopher Baraloto;  Plí;  nio Barbosa Camargo;  Jorcely Barroso;  Lilian Blanc;  Damien Bonal;  Frans Bongers;  René;  Boot;  Foster Brown;  Benoit Burban;  José;  Luí;  s Camargo;  Wendeson Castro;  Victor Chama Moscoso;  Jerome Chave;  James Comiskey;  Fernando Cornejo Valverde;  Antonio Lola da Costa;  Nallaret Davila Cardozo;  Anthony Di Fiore;  Auré;  lie Dourdain;  Terry Erwin;  Gerardo Flores Llampazo;  Ima Cé;  lia Guimarã;  es Vieira;  Rafael Herrera;  Eurí;  dice Honorio Coronado;  Isau Huamantupa-Chuquimaco;  Eliana Jimenez-Rojas;  Timothy Killeen;  Susan Laurance;  William Laurance;  Aurora Levesley;  Simon L. Lewis;  Karina Liana Lisboa Melgaç;  o Ladvocat;  Gabriela Lopez-Gonzalez;  Thomas Lovejoy;  Patrick Meir;  Casimiro Mendoza;  Paulo Morandi;  David Neill;  Adriano José;  Nogueira Lima;  Percy Nuñ;  ez Vargas;  Edmar Almeida de Oliveira;  Nadir Pallqui Camacho;  Guido Pardo;  Julie Peacock;  Marielos Peñ;  a-Claros;  Maria Cristina Peñ;  uela-Mora;  Georgia Pickavance;  John Pipoly;  Nigel Pitman;  Adriana Prieto;  Thomas A. M. Pugh;  Carlos Quesada;  Hirma Ramirez-Angulo;  Simone Matias de Almeida Reis;  Maxime Rejou-Machain;  Zorayda Restrepo Correa;  Lily Rodriguez Bayona;  Agustí;  n Rudas;  Rafael Salomã;  o;  Julio Serrano;  Javier Silva Espejo;  Natalino Silva;  James Singh;  Clement Stahl;  Juliana Stropp;  Varun Swamy;  Joey Talbot;  Hans ter Steege;  John Terborgh;  Raquel Thomas;  Marisol Toledo;  Armando Torres-Lezama;  Luis Valenzuela Gamarra;  Geertje van der Heijden;  Peter van der Meer;  Peter van der Hout;  Rodolfo Vasquez Martinez;  Simone Aparecida Vieira;  Jeanneth Villalobos Cayo;  Vincent Vos;  Roderick Zagt;  Pieter Zuidema;  David Galbraith
收藏  |  浏览/下载:26/0  |  提交时间:2020/11/20
Climate drives the geography of marine consumption by changing predator communities 期刊论文
Proceedings of the National Academy of Sciences, 2020
作者:  Matthew A. Whalen;  Ross D. B. Whippo;  John J. Stachowicz;  Paul H. York;  Erin Aiello;  Teresa Alcoverro;  Andrew H. Altieri;  Lisandro Benedetti-Cecchi;  Camilla Bertolini;  Midoli Bresch;  Fabio Bulleri;  Paul E. Carnell;  Stéphanie Cimon;  Rod M. Connolly;  Mathieu Cusson;  Meredith S. Diskin;  Elrika D’Souza;  Augusto A. V. Flores;  F. Joel Fodrie;  Aaron W. E. Galloway;  Leo C. Gaskins;  Olivia J. Graham;  Torrance C. Hanley;  Christopher J. Henderson;  Clara M. Hereu;  Margot Hessing-Lewis;  Kevin A. Hovel;  Brent B. Hughes;  A. Randall Hughes;  Kristin M. Hultgren;  Holger Jänes;  Dean S. Janiak;  Lane N. Johnston;  Pablo Jorgensen;  Brendan P. Kelaher;  Claudia Kruschel;  Brendan S. Lanham;  Kun-Seop Lee;  Jonathan S. Lefcheck;  Enrique Lozano-Álvarez;  Peter I. Macreadie;  Zachary L. Monteith;  Nessa E. O’Connor;  Andrew D. Olds;  Jennifer K. O’Leary;  Christopher J. Patrick;  Oscar Pino;  Alistair G. B. Poore;  Michael A. Rasheed;  Wendel W. Raymond;  Katrin Reiss;  O. Kennedy Rhoades;  Max T. Robinson;  Paige G. Ross;  Francesca Rossi;  Thomas A. Schlacher;  Janina Seemann;  Brian R. Silliman;  Delbert L. Smee;  Martin Thiel;  Richard K. F. Unsworth;  Brigitta I. van Tussenbroek;  Adriana Vergés;  Mallarie E. Yeager;  Bree K. Yednock;  Shelby L. Ziegler;  J. Emmett Duffy
收藏  |  浏览/下载:24/0  |  提交时间:2020/11/09
COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data 期刊论文
Global Change Biology, 2020
作者:  Ben Bond‐;  Lamberty;  Danielle S. Christianson;  Avni Malhotra;  Stephanie C. Pennington;  Debjani Sihi;  Amir AghaKouchak;  Hassan Anjileli;  M. Altaf Arain;  Juan J. Armesto;  Samaneh Ashraf;  Mioko Ataka;  Dennis Baldocchi;  Thomas Andrew Black;  Nina Buchmann;  Mariah S. Carbone;  Shih‐;  Chieh Chang;  Patrick Crill;  Peter S. Curtis;  Eric A. Davidson;  Ankur R. Desai;  John E. Drake;  Tarek S. El‐;  Madany;  Michael Gavazzi;  Carolyn‐;  Monika Gö;  rres;  Christopher M. Gough;  Michael Goulden;  Jillian Gregg;  Omar Gutié;  rrez del Arroyo;  Jin‐;  Sheng He;  Takashi Hirano;  Anya Hopple;  Holly Hughes;  ;  rvi Jä;  rveoja;  Rachhpal Jassal;  Jinshi Jian;  Haiming Kan;  Jason Kaye;  Yuji Kominami;  Naishen Liang;  David Lipson;  Catriona A. Macdonald;  Kadmiel Maseyk;  Kayla Mathes;  Marguerite Mauritz;  Melanie A. Mayes;  Steve McNulty;  Guofang Miao;  Mirco Migliavacca;  Scott Miller;  Chelcy F. Miniat;  Jennifer G. Nietz;  Mats B. Nilsson;  Asko Noormets;  Hamidreza Norouzi;  Christine S. O’;  Connell;  Bruce Osborne;  Cecilio Oyonarte;  Zhuo Pang;  Matthias Peichl;  Elise Pendall;  Jorge F. Perez‐;  Quezada;  Claire L. Phillips;  Richard P. Phillips;  James W. Raich;  Alexandre A. Renchon;  Nadine K. Ruehr;  Enrique P. Sá;  nchez‐;  Cañ;  ete;  Matthew Saunders;  Kathleen E. Savage;  Marion Schrumpf;  Russell L. Scott;  Ulli Seibt;  Whendee L. Silver;  Wu Sun;  Daphne Szutu;  Kentaro Takagi;  Masahiro Takagi;  Munemasa Teramoto;  Mark G. Tjoelker;  Susan Trumbore;  Masahito Ueyama;  Rodrigo Vargas;  Ruth K. Varner;  Joseph Verfaillie;  Christoph Vogel;  Jinsong Wang;  Greg Winston;  Tana E. Wood;  Juying Wu;  Thomas Wutzler;  Jiye Zeng;  Tianshan Zha;  Quan Zhang;  Junliang Zou
收藏  |  浏览/下载:15/0  |  提交时间:2020/10/12
Preferential localized thinning of lithospheric mantle in the melt-poor Malawi Rift 期刊论文
NATURE GEOSCIENCE, 2020
作者:  Hopper, Emily;  Gaherty, James B.;  Shillington, Donna J.;  Accardo, Natalie J.;  Nyblade, Andrew A.;  Holtzman, Benjamin K.;  Havlin, Christopher;  Scholz, Christopher A.;  Chindandali, Patrick R. N.;  Ferdinand, Richard W.;  Mulibo, Gabriel D.;  Mbogoni, Gabriel
收藏  |  浏览/下载:7/0  |  提交时间:2020/08/09
Representing the function and sensitivity of coastal interfaces in Earth system models 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Ward, Nicholas D.;  Megonigal, J. Patrick;  Bond-Lamberty, Ben;  Bailey, Vanessa L.;  Butman, David;  Canuel, Elizabeth A.;  Diefenderfer, Heida;  Ganju, Neil K.;  Goni, Miguel A.;  Graham, Emily B.;  Hopkinson, Charles S.;  Khangaonkar, Tarang;  Langley, J. Adam;  McDowell, Nate G.;  Myers-Pigg, Allison N.;  Neumann, Rebecca B.;  Osburn, Christopher L.;  Price, Rene M.;  Rowland, Joel;  Sengupta, Aditi;  Simard, Marc;  Thornton, Peter E.;  Tzortziou, Maria;  Vargas, Rodrigo;  Weisenhorn, Pamela B.;  Windham-Myers, Lisamarie
收藏  |  浏览/下载:13/0  |  提交时间:2020/05/20
Global airborne sampling reveals a previously unobserved dimethyl sulfide oxidation mechanism in the marine atmosphere 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (9) : 4505-4510
作者:  Veres, Patrick R.;  Neuman, J. Andrew;  Bertram, Timothy H.;  Assaf, Emmanuel;  Wolfe, Glenn M.;  Williamson, Christina J.;  Weinzierl, Bernadett;  Tilmes, Simone;  Thompson, Chelsea R.;  Thames, Alexander B.;  Schroder, Jason C.;  Saiz-Lopez, Alfonso;  Rollins, Andrew W.;  Roberts, James M.;  Price, Derek;  Peischl, Jeff;  Nault, Benjamin A.;  Moller, Kristian H.;  Miller, David O.;  Meinardi, Simone;  Li, Qinyi;  Lamarque, Jean-Francois;  Kupc, Agnieszka;  Kjaergaard, Henrik G.;  Kinnison, Douglas;  Jimenez, Jose L.;  Jernigan, Christopher M.;  Hornbrook, Rebecca S.;  Hills, Alan;  Dollner, Maximilian;  Day, Douglas A.;  Cuevas, Carlos A.;  Campuzano-Jost, Pedro;  Burkholder, James;  Bui, T. Paul;  Brune, William H.;  Brown, Steven S.;  Brock, Charles A.;  Bourgeois, Ilann;  Blake, Donald R.;  Apel, Eric C.;  Ryerson, Thomas B.
收藏  |  浏览/下载:23/0  |  提交时间:2020/05/13
dimethyl sulfide  marine sulfur  autoxidation  marine aerosols  aerosol sulfate  
Complete biosynthesis of cannabinoids and their unnatural analogues in yeast (2019) (vol 567, pg 123, 2019) 期刊论文
NATURE, 2020, 580 (7802) : E2-E2
作者:  Wang, Fei;  Wang, Kaiyu;  Forknall, Nora;  Patrick, Christopher;  Yang, Tansy;  Parekh, Ruchi;  Bock, Davi;  Dickson, Barry J.
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/03

An amendment to this paper has been published and can be accessed via a link at the top of the paper.


  
The molecular basis for sugar import in malaria parasites 期刊论文
NATURE, 2020, 578 (7794) : 321-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/03

Elucidating the mechanism of sugar import requires a molecular understanding of how transporters couple sugar binding and gating events. Whereas mammalian glucose transporters (GLUTs) are specialists(1), the hexose transporter from the malaria parasite Plasmodium falciparum PfHT1(2,3) has acquired the ability to transport both glucose and fructose sugars as efficiently as the dedicated glucose (GLUT3) and fructose (GLUT5) transporters. Here, to establish the molecular basis of sugar promiscuity in malaria parasites, we determined the crystal structure of PfHT1 in complex with d-glucose at a resolution of 3.6 angstrom. We found that the sugar-binding site in PfHT1 is very similar to those of the distantly related GLUT3 and GLUT5 structures(4,5). Nevertheless, engineered PfHT1 mutations made to match GLUT sugar-binding sites did not shift sugar preferences. The extracellular substrate-gating helix TM7b in PfHT1 was positioned in a fully occluded conformation, providing a unique glimpse into how sugar binding and gating are coupled. We determined that polar contacts between TM7b and TM1 (located about 15 angstrom from d-glucose) are just as critical for transport as the residues that directly coordinate d-glucose, which demonstrates a strong allosteric coupling between sugar binding and gating. We conclude that PfHT1 has achieved substrate promiscuity not by modifying its sugar-binding site, but instead by evolving substrate-gating dynamics.


Crystal structure of the Plasmodium falciparum hexose transporter PfHT1 reveals the molecular basis of its ability to transport multiple types of sugar as efficiently as the dedicated mammalian glucose and fructose transporters.


  
Processive extrusion of polypeptide loops by a Hsp100 disaggregase 期刊论文
NATURE, 2020, 578 (7794) : 317-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

The ability to reverse protein aggregation is vital to cells(1,2). Hsp100 disaggregases such as ClpB and Hsp104 are proposed to catalyse this reaction by translocating polypeptide loops through their central pore(3,4). This model of disaggregation is appealing, as it could explain how polypeptides entangled within aggregates can be extracted and subsequently refolded with the assistance of Hsp70(4,5). However, the model is also controversial, as the necessary motor activity has not been identified(6-8) and recent findings indicate non-processive mechanisms such as entropic pulling or Brownian ratcheting(9,10). How loop formation would be accomplished is also obscure. Indeed, cryo-electron microscopy studies consistently show single polypeptide strands in the Hsp100 pore(11,12). Here, by following individual ClpB-substrate complexes in real time, we unambiguously demonstrate processive translocation of looped polypeptides. We integrate optical tweezers with fluorescent-particle tracking to show that ClpB translocates both arms of the loop simultaneously and switches to single-arm translocation when encountering obstacles. ClpB is notably powerful and rapid  it exerts forces of more than 50 pN at speeds of more than 500 residues per second in bursts of up to 28 residues. Remarkably, substrates refold while exiting the pore, analogous to co-translational folding. Our findings have implications for protein-processing phenomena including ubiquitin-mediated remodelling by Cdc48 (or its mammalian orthologue p97)(13) and degradation by the 26S proteasome(14).


A combination of optical tweezers and fluorescent-particle tracking is used to dissect the dynamics of the Hsp100 disaggregase ClpB, and show that the processive extrusion of polypeptide loops is the mechanistic basis of its activity.


  
Activation of the GLP-1 receptor by a non-peptidic agonist 期刊论文
NATURE, 2020, 577 (7790) : 432-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

Class B G-protein-coupled receptors are major targets for the treatment of chronic diseases, including diabetes and obesity(1). Structures of active receptors reveal peptide agonists engage deep within the receptor core, leading to an outward movement of extracellular loop 3 and the tops of transmembrane helices 6 and 7, an inward movement of transmembrane helix 1, reorganization of extracellular loop 2 and outward movement of the intracellular side of transmembrane helix 6, resulting in G-protein interaction and activation(2-6). Here we solved the structure of a non-peptide agonist, TT-OAD2, bound to the glucagon-like peptide-1 (GLP-1) receptor. Our structure identified an unpredicted non-peptide agonist-binding pocket in which reorganization of extracellular loop 3 and transmembrane helices 6 and 7 manifests independently of direct ligand interaction within the deep transmembrane domain pocket. TT-OAD2 exhibits biased agonism, and kinetics of G-protein activation and signalling that are distinct from peptide agonists. Within the structure, TT-OAD2 protrudes beyond the receptor core to interact with the lipid or detergent, providing an explanation for the distinct activation kinetics that may contribute to the clinical efficacy of this compound series. This work alters our understanding of the events that drive the activation of class B receptors.