Global S&T Development Trend Analysis Platform of Resources and Environment
DOI | 10.1038/ncomms14379 |
A machine-compiled database of genome-wide association studies | |
Kuleshov, Volodymyr1,2; Ding, Jialin1; Vo, Christopher1; Hancock, Braden1; Ratner, Alexander1; Li, Yang3; Re, Christopher1; Batzoglou, Serafim1; Snyder, Michael2 | |
2019-07-26 | |
发表期刊 | NATURE COMMUNICATIONS |
ISSN | 2041-1723 |
出版年 | 2019 |
卷号 | 10 |
文章类型 | Article |
语种 | 英语 |
国家 | USA |
英文摘要 | Tens of thousands of genotype-phenotype associations have been discovered to date, yet not all of them are easily accessible to scientists. Here, we describe GWASkb, a machinecompiled knowledge base of genetic associations collected from the scientific literature using automated information extraction algorithms. Our information extraction system helps curators by automatically collecting over 6,000 associations from open-access publications with an estimated recall of 60-80% and with an estimated precision of 78-94% (measured relative to existing manually curated knowledge bases). This system represents a fully automated GWAS curation effort and is made possible by a paradigm for constructing machine learning systems called data programming. Our work represents a step towards making the curation of scientific literature more efficient using automated systems. |
领域 | 资源环境 |
收录类别 | SCI-E |
WOS记录号 | WOS:000477704700013 |
WOS关键词 | RESOURCE |
WOS类目 | Multidisciplinary Sciences |
WOS研究方向 | Science & Technology - Other Topics |
URL | 查看原文 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://119.78.100.173/C666/handle/2XK7JSWQ/203192 |
专题 | 资源环境科学 |
作者单位 | 1.Stanford Univ, Dept Comp Sci, Stanford, CA 94305 USA; 2.Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA; 3.Univ Chicago, Dept Med, Chicago, IL 60637 USA |
推荐引用方式 GB/T 7714 | Kuleshov, Volodymyr,Ding, Jialin,Vo, Christopher,et al. A machine-compiled database of genome-wide association studies[J]. NATURE COMMUNICATIONS,2019,10. |
APA | Kuleshov, Volodymyr.,Ding, Jialin.,Vo, Christopher.,Hancock, Braden.,Ratner, Alexander.,...&Snyder, Michael.(2019).A machine-compiled database of genome-wide association studies.NATURE COMMUNICATIONS,10. |
MLA | Kuleshov, Volodymyr,et al."A machine-compiled database of genome-wide association studies".NATURE COMMUNICATIONS 10(2019). |
条目包含的文件 | 条目无相关文件。 |
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