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DOI10.1038/s41467-018-04162-3
Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape
Ginno, Paul Adrian1; Burger, Lukas1,2; Seebacher, Jan1; Iesmantavicius, Vytautas1; Schuebeler, Dirk1,3
2018-10-02
发表期刊NATURE COMMUNICATIONS
ISSN2041-1723
出版年2018
卷号9
文章类型Article
语种英语
国家Switzerland
英文摘要

Regulation of transcription, replication, and cell division relies on differential protein binding to DNA and chromatin, yet it is unclear which regulatory components remain bound to compacted mitotic chromosomes. By utilizing the buoyant density of DNA-protein complexes after cross-linking, we here develop a mass spectrometry-based approach to quantify the chromatin-associated proteome at separate stages of the cell cycle. While epigenetic modifiers that promote transcription are lost from mitotic chromatin, repressive modifiers generally remain associated. Furthermore, while proteins involved in transcriptional elongation are evicted, most identified transcription factors are retained on mitotic chromatin to varying degrees, including core promoter binding proteins. This predicts conservation of the regulatory landscape on mitotic chromosomes, which we confirm by genome-wide measurements of chromatin accessibility. In summary, this work establishes an approach to study chromatin, provides a comprehensive catalog of chromatin changes during the cell cycle, and reveals the degree to which the genomic regulatory landscape is maintained through mitosis.


领域资源环境
收录类别SCI-E
WOS记录号WOS:000446017000016
WOS关键词TRANSCRIPTION FACTORS ; IN-VIVO ; R PACKAGE ; BOOKMARKING ; ASSOCIATION ; BINDING ; PHOSPHORYLATION ; QUANTIFICATION ; FORMALDEHYDE ; ACTIVATION
WOS类目Multidisciplinary Sciences
WOS研究方向Science & Technology - Other Topics
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文献类型期刊论文
条目标识符http://119.78.100.173/C666/handle/2XK7JSWQ/203809
专题资源环境科学
作者单位1.Friedrich Miescher Inst Biomed Res, Basel, Switzerland;
2.Swiss Inst Bioinformat, Basel, Switzerland;
3.Univ Basel, Fac Sci, Basel, Switzerland
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Ginno, Paul Adrian,Burger, Lukas,Seebacher, Jan,et al. Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape[J]. NATURE COMMUNICATIONS,2018,9.
APA Ginno, Paul Adrian,Burger, Lukas,Seebacher, Jan,Iesmantavicius, Vytautas,&Schuebeler, Dirk.(2018).Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape.NATURE COMMUNICATIONS,9.
MLA Ginno, Paul Adrian,et al."Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape".NATURE COMMUNICATIONS 9(2018).
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