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Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Carraro, Luca;  Maechler, Elvira;  Wuethrich, Remo;  Altermatt, Florian
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/21
Light limitation regulates the response of autumn terrestrial carbon uptake to warming 期刊论文
NATURE CLIMATE CHANGE, 2020
作者:  Zhang, Yao;  Commane, Roisin;  Zhou, Sha;  Williams, A. Park;  Gentine, Pierre
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/09
Insights into the assembly and activation of the microtubule nucleator gamma-TuRC 期刊论文
NATURE, 2020, 578 (7795) : 467-+
作者:  Cyranoski, David
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

Microtubules are dynamic polymers of alpha- and beta-tubulin and have crucial roles in cell signalling, cell migration, intracellular transport and chromosome segregation(1). They assemble de novo from alpha beta-tubulin dimers in an essential process termed microtubule nucleation. Complexes that contain the protein gamma-tubulin serve as structural templates for the microtubule nucleation reaction(2). In vertebrates, microtubules are nucleated by the 2.2-megadalton gamma-tubulin ring complex (gamma-TuRC), which comprises gamma-tubulin, five related gamma-tubulin complex proteins (GCP2-GCP6) and additional factors(3). GCP6 is unique among the GCP proteins because it carries an extended insertion domain of unknown function. Our understanding of microtubule formation in cells and tissues is limited by a lack of high-resolution structural information on the gamma-TuRC. Here we present the cryo-electron microscopy structure of gamma-TuRC from Xenopus laevis at 4.8 angstrom global resolution, and identify a 14-spoked arrangement of GCP proteins and gamma-tubulins in a partially flexible open left-handed spiral with a uniform sequence of GCP variants. By forming specific interactions with other GCP proteins, the GCP6-specific insertion domain acts as a scaffold for the assembly of the gamma-TuRC. Unexpectedly, we identify actin as a bona fide structural component of the gamma-TuRC with functional relevance in microtubule nucleation. The spiral geometry of gamma-TuRC is suboptimal for microtubule nucleation and a controlled conformational rearrangement of the gamma-TuRC is required for its activation. Collectively, our cryo-electron microscopy reconstructions provide detailed insights into the molecular organization, assembly and activation mechanism of vertebrate gamma-TuRC, and will serve as a framework for the mechanistic understanding of fundamental biological processes associated with microtubule nucleation, such as meiotic and mitotic spindle formation and centriole biogenesis(4).


The cryo-EM structure of the gamma-tubulin ring complex (gamma-TuRC) from Xenopus laevis provides insights into the molecular organization of the complex, and shows that actin is a structural component that is functionally relevant to microtubule nucleation.


  
Quantifying the drivers and predictability of seasonal changes in African fire 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Yu, Yan;  Mao, Jiafu;  Thornton, Peter E.;  Notaro, Michael;  Wullschleger, Stan D.;  Shi, Xiaoying;  Hoffman, Forrest M.;  Wang, Yaoping
收藏  |  浏览/下载:9/0  |  提交时间:2020/06/16
The role of herbivory in the macroevolution of vertebrate hormone dynamics 期刊论文
ECOLOGY LETTERS, 2020
作者:  Edwards, Phoebe D.;  Sookhan, Nicholas;  Boonstra, Rudy
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/02
Chemical ecology  comparative biology  corticosteroid-binding globulin  cortisol  glucocorticoids  herbivory  phytochemicals  plant-herbivore interactions  secondary plant compounds  
International evaluation of an AI system for breast cancer screening 期刊论文
NATURE, 2020, 577 (7788) : 89-+
作者:  McKinney, Scott Mayer;  Sieniek, Marcin;  Godbole, Varun;  Godwin, Jonathan;  Antropova, Natasha;  Ashrafian, Hutan;  Back, Trevor;  Chesus, Mary;  Corrado, Greg C.;  Darzi, Ara;  Etemadi, Mozziyar;  Garcia-Vicente, Florencia;  Gilbert, Fiona J.;  Halling-Brown, Mark;  Hassabis, Demis;  Jansen, Sunny;  Karthikesalingam, Alan;  Kelly, Christopher J.;  King, Dominic;  Ledsam, Joseph R.;  Melnick, David;  Mostofi, Hormuz;  Peng, Lily;  Reicher, Joshua Jay;  Romera-Paredes, Bernardino;  Sidebottom, Richard;  Suleyman, Mustafa;  Tse, Daniel;  Young, Kenneth C.;  De Fauw, Jeffrey;  Shetty, Shravya
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

Screening mammography aims to identify breast cancer at earlier stages of the disease, when treatment can be more successful(1). Despite the existence of screening programmes worldwide, the interpretation of mammograms is affected by high rates of false positives and false negatives(2). Here we present an artificial intelligence (AI) system that is capable of surpassing human experts in breast cancer prediction. To assess its performance in the clinical setting, we curated a large representative dataset from the UK and a large enriched dataset from the USA. We show an absolute reduction of 5.7% and 1.2% (USA and UK) in false positives and 9.4% and 2.7% in false negatives. We provide evidence of the ability of the system to generalize from the UK to the USA. In an independent study of six radiologists, the AI system outperformed all of the human readers: the area under the receiver operating characteristic curve (AUC-ROC) for the AI system was greater than the AUC-ROC for the average radiologist by an absolute margin of 11.5%. We ran a simulation in which the AI system participated in the double-reading process that is used in the UK, and found that the AI system maintained non-inferior performance and reduced the workload of the second reader by 88%. This robust assessment of the AI system paves the way for clinical trials to improve the accuracy and efficiency of breast cancer screening.


  
Stretching and folding sustain microscale chemical gradients in porous media 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (24) : 13359-13365
作者:  Heyman, Joris;  Lester, Daniel R.;  Turuban, Regis;  Meheust, Yves;  Le Borgne, Tanguy
收藏  |  浏览/下载:5/0  |  提交时间:2020/06/01
porous media  reactive transport  chaotic mixing  chemical gradients  
Protein-structure prediction gets real 期刊论文
NATURE, 2020, 577 (7792) : 627-628
作者:  Pillai, Arvind S.;  Chandler, Shane A.;  Liu, Yang;  Signor, Anthony, V;  Cortez-Romero, Carlos R.;  Benesch, Justin L. P.;  Laganowsky, Arthur;  Storz, Jay F.;  Hochberg, Georg K. A.;  Thornton, Joseph W.
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/03

Two threads of research in the quest for methods that predict the 3D structures of proteins from their amino-acid sequences have become fully intertwined. The result is a leap forward in the accuracy of predictions.


  
Co-occurrence is not evidence of ecological interactions 期刊论文
ECOLOGY LETTERS, 2020, 23 (7) : 1050-1063
作者:  Blanchet, F. Guillaume;  Cazelles, Kevin;  Gravel, Dominique
收藏  |  浏览/下载:8/0  |  提交时间:2020/05/20
Co-occurrence analysis  co-occurrence networks  ecological interactions  presence-absence data  statistical inference  
Social-media and newspaper reports reveal large-scale meteorological drivers of floods on Sumatra 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Baranowski, Dariusz B.;  Flatau, Maria K.;  Flatau, Piotr J.;  Karnawati, Dwikorita;  Barabasz, Katarzyna;  Labuz, Michal;  Latos, Beata;  Schmidt, Jerome M.;  Paski, Jaka A., I;  Marzuki
收藏  |  浏览/下载:9/0  |  提交时间:2020/05/20