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Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system 期刊论文
NATURE, 2020, 577 (7789) : 271-+
作者:  Halpin-Healy, Tyler S.;  Klompe, Sanne E.;  Sternberg, Samuel H.;  Fernandez, Israel S.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

Bacteria use adaptive immune systems encoded by CRISPR and Cas genes to maintain genomic integrity when challenged by pathogens and mobile genetic elements(1-3). Type I CRISPR-Cas systems typically target foreign DNA for degradation via joint action of the ribonucleoprotein complex Cascade and the helicase-nuclease Cas3(4,5), but nuclease-deficient type I systems lacking Cas3 have been repurposed for RNA-guided transposition by bacterial Tn7-like transposons(6,7). How CRISPR- and transposon-associated machineries collaborate during DNA targeting and insertion remains unknown. Here we describe structures of a TniQ-Cascade complex encoded by the Vibrio cholerae Tn6677 transposon using cryo-electron microscopy, revealing the mechanistic basis of this functional coupling. The cryo-electron microscopy maps enabled de novo modelling and refinement of the transposition protein TniQ, which binds to the Cascade complex as a dimer in a head-to-tail configuration, at the interface formed by Cas6 and Cas7 near the 3'  end of the CRISPR RNA (crRNA). The natural Cas8-Cas5 fusion protein binds the 5'  crRNA handle and contacts the TniQ dimer via a flexible insertion domain. A target DNA-bound structure reveals critical interactions necessary for protospacer-adjacent motif recognition and R-loop formation. This work lays the foundation for a structural understanding of how DNA targeting by TniQ-Cascade leads to downstream recruitment of additional transposase proteins, and will guide protein engineering efforts to leverage this system for programmable DNA insertions in genome-engineering applications.


  
A land systems science approach to assessing forest governance and characterizing the emergence of social forestry in the Western Cascades of Oregon 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2020, 15 (5)
作者:  Gosnell, Hannah;  Kennedy, Robert;  Harris, Tyler;  Abrams, Jesse
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/02
ecosystem management  landscape pattern and process  land sparing  sharing  land use allocations  Northwest Forest Plan  regeneration harvest  social license  
Quantifying the direct network effect for online platforms supporting industrial symbiosis: an agent-based simulation study 期刊论文
ECOLOGICAL ECONOMICS, 2020, 170
作者:  Fraccascia, Luca
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/02
Self-organized industrial symbiosis networks  Circular economy  Online platforms  Agent-based simulation  Network effect  
Surprisingly malleable public preferences for climate adaptation in forests 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2020, 15 (3)
作者:  Findlater, Kieran M.;  St-Laurent, Guillaume Peterson;  Hagerman, Shannon;  Kozak, Robert
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/02
climate change adaptation  forestry  risk perceptions  public survey  British Columbia  constructed preferences  
Improving Simulation Efficiency of MCMC for Inverse Modeling of Hydrologic Systems With a Kalman-Inspired Proposal Distribution 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (3)
作者:  Zhang, Jiangjiang;  Vrugt, Jasper A.;  Shi, Xiaoqing;  Lin, Guang;  Wu, Laosheng;  Zeng, Lingzao
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/02
Policy integration: Do laws or actors integrate issues relevant to flood risk management in Switzerland? 期刊论文
GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS, 2020, 61
作者:  Metz, Florence;  Angst, Mario;  Fischer, Manuel
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
Policy integration  issue integration  flood risk management  adaptive governance  network analysis  bipartite network  
From incremental to transformative adaptation in individual responses to climate-exacerbated hazards 期刊论文
NATURE CLIMATE CHANGE, 2020, 10 (3) : 200-208
作者:  Wilson, Robyn S.;  Herziger, Atar;  Hamilton, Matthew;  Brooks, Jeremy S.
收藏  |  浏览/下载:7/0  |  提交时间:2020/05/13
Adaptive Multirate Mass Transfer (aMMT) Model: A New Approach to Upscale Regional-Scale Transport Under Transient Flow Conditions 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (2)
作者:  Guo, Zhilin;  Henri, Christopher V.;  Fogg, Graham E.;  Zhang, Yong;  Zheng, Chunmiao
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/02
aMMT  MRMT  upscaling  transport  transient flow