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Autophagy promotes immune evasion of pancreatic cancer by degrading MHC-I 期刊论文
NATURE, 2020, 581 (7806) : 100-+
作者:  Waszak, Sebastian M.;  Robinson, Giles W.;  Gudenas, Brian L.;  Smith, Kyle S.;  Forget, Antoine;  Kojic, Marija;  Garcia-Lopez, Jesus;  Hadley, Jennifer;  Hamilton, Kayla V.;  Indersie, Emilie;  Buchhalter, Ivo;  Kerssemakers, Jules;  Jager, Natalie;  Sharma, Tanvi;  Rausch, Tobias;  Kool, Marcel;  Sturm, Dominik;  Jones, David T. W.;  Vasilyeva, Aksana;  Tatevossian, Ruth G.;  Neale, Geoffrey;  Lombard, Berangere;  Loew, Damarys;  Nakitandwe, Joy;  Rusch, Michael;  Bowers, Daniel C.;  Bendel, Anne;  Partap, Sonia;  Chintagumpala, Murali;  Crawford, John;  Gottardo, Nicholas G.;  Smith, Amy;  Dufour, Christelle;  Rutkowski, Stefan;  Eggen, Tone;  Wesenberg, Finn;  Kjaerheim, Kristina;  Feychting, Maria;  Lannering, Birgitta;  Schuz, Joachim;  Johansen, Christoffer;  Andersen, Tina V.;  Roosli, Martin;  Kuehni, Claudia E.;  Grotzer, Michael;  Remke, Marc;  Puget, Stephanie;  Pajtler, Kristian W.;  Milde, Till;  Witt, Olaf;  Ryzhova, Marina;  Korshunov, Andrey;  Orr, Brent A.;  Ellison, David W.;  Brugieres, Laurence;  Lichter, Peter;  Nichols, Kim E.;  Gajjar, Amar;  Wainwright, Brandon J.;  Ayrault, Olivier;  Korbel, Jan O.;  Northcott, Paul A.;  Pfister, Stefan M.
收藏  |  浏览/下载:39/0  |  提交时间:2020/07/03

Immune evasion is a major obstacle for cancer treatment. Common mechanisms of evasion include impaired antigen presentation caused by mutations or loss of heterozygosity of the major histocompatibility complex class I (MHC-I), which has been implicated in resistance to immune checkpoint blockade (ICB) therapy(1-3). However, in pancreatic ductal adenocarcinoma (PDAC), which is resistant to most therapies including ICB4, mutations that cause loss of MHC-I are rarely found(5) despite the frequent downregulation of MHC-I expression(6-8). Here we show that, in PDAC, MHC-I molecules are selectively targeted for lysosomal degradation by an autophagy-dependent mechanism that involves the autophagy cargo receptor NBR1. PDAC cells display reduced expression of MHC-I at the cell surface and instead demonstrate predominant localization within autophagosomes and lysosomes. Notably, inhibition of autophagy restores surface levels of MHC-I and leads to improved antigen presentation, enhanced anti-tumour T cell responses and reduced tumour growth in syngeneic host mice. Accordingly, the anti-tumour effects of autophagy inhibition are reversed by depleting CD8(+) T cells or reducing surface expression of MHC-I. Inhibition of autophagy, either genetically or pharmacologically with chloroquine, synergizes with dual ICB therapy (anti-PD1 and anti-CTLA4 antibodies), and leads to an enhanced anti-tumour immune response. Our findings demonstrate a role for enhanced autophagy or lysosome function in immune evasion by selective targeting of MHC-I molecules for degradation, and provide a rationale for the combination of autophagy inhibition and dual ICB therapy as a therapeutic strategy against PDAC.


Inhibition of the autophagy-lysosome system upregulates surface expression of MHC class I proteins and enhances antigen presentation, and evokes a potent anti-tumour immune response that is mediated by CD8(+) T cells.


  
A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds 期刊论文
NATURE, 2020, 580 (7803) : 409-+
作者:  Al-Shayeb, Basem;  Sachdeva, Rohan;  Chen, Lin-Xing;  Ward, Fred;  Munk, Patrick;  Devoto, Audra;  Castelle, Cindy J.;  Olm, Matthew R.;  Bouma-Gregson, Keith;  Amano, Yuki;  He, Christine;  Meheust, Raphael;  Brooks, Brandon;  Thomas, Alex;  Levy, Adi;  Matheus-Carnevali, Paula;  Sun, Christine;  Goltsman, Daniela S. A.;  Borton, Mikayla A.;  Sharrar, Allison;  Jaffe, Alexander L.;  Nelson, Tara C.;  Kantor, Rose;  Keren, Ray;  Lane, Katherine R.;  Farag, Ibrahim F.;  Lei, Shufei;  Finstad, Kari;  Amundson, Ronald;  Anantharaman, Karthik;  Zhou, Jinglie;  Probst, Alexander J.;  Power, Mary E.;  Tringe, Susannah G.;  Li, Wen-Jun;  Wrighton, Kelly;  Harrison, Sue;  Morowitz, Michael;  Relman, David A.;  Doudna, Jennifer A.;  Lehours, Anne-Catherine;  Warren, Lesley;  Cate, Jamie H. D.;  Santini, Joanne M.;  Banfield, Jillian F.
收藏  |  浏览/下载:37/0  |  提交时间:2020/07/03

Mycobacterium tuberculosis (Mtb) is an obligate human pathogen and the causative agent of tuberculosis(1-3). Although Mtb can synthesize vitamin B-12 (cobalamin) de novo, uptake of cobalamin has been linked to pathogenesis of tuberculosis2. Mtb does not encode any characterized cobalamin transporter(4-6)  however, the gene rv1819c was found to be essential for uptake of cobalamin(1). This result is difficult to reconcile with the original annotation of Rv1819c as a protein implicated in the transport of antimicrobial peptides such as bleomycin(7). In addition, uptake of cobalamin seems inconsistent with the amino acid sequence, which suggests that Rv1819c has a bacterial ATP-binding cassette (ABC)-exporter fold1. Here, we present structures of Rv1819c, which reveal that the protein indeed contains the ABC-exporter fold, as well as a large water-filled cavity of about 7,700 angstrom(3), which enables the protein to transport the unrelated hydrophilic compounds bleomycin and cobalamin. On the basis of these structures, we propose that Rv1819c is a multi-solute transporter for hydrophilic molecules, analogous to the multidrug exporters of the ABC transporter family, which pump out structurally diverse hydrophobic compounds from cells(8-11).


  
Classification with a disordered dopantatom network in silicon 期刊论文
NATURE, 2020, 577 (7790) : 341-+
作者:  Vagnozzi, Ronald J.;  Maillet, Marjorie;  Sargent, Michelle A.;  Khalil, Hadi;  Johansen, Anne Katrine Z.;  Schwanekamp, Jennifer A.;  York, Allen J.;  Huang, Vincent;  Nahrendorf, Matthias;  Sadayappan, Sakthivel;  Molkentin, Jeffery D.
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/03

Classification is an important task at which both biological and artificial neural networks excel(1,2). In machine learning, nonlinear projection into a high-dimensional feature space can make data linearly separable(3,4), simplifying the classification of complex features. Such nonlinear projections are computationally expensive in conventional computers. A promising approach is to exploit physical materials systems that perform this nonlinear projection intrinsically, because of their high computational density(5), inherent parallelism and energy efficiency(6,7). However, existing approaches either rely on the systems'  time dynamics, which requires sequential data processing and therefore hinders parallel computation(5,6,8), or employ large materials systems that are difficult to scale up(7). Here we use a parallel, nanoscale approach inspired by filters in the brain(1) and artificial neural networks(2) to perform nonlinear classification and feature extraction. We exploit the nonlinearity of hopping conduction(9-11) through an electrically tunable network of boron dopant atoms in silicon, reconfiguring the network through artificial evolution to realize different computational functions. We first solve the canonical two-input binary classification problem, realizing all Boolean logic gates(12) up to room temperature, demonstrating nonlinear classification with the nanomaterial system. We then evolve our dopant network to realize feature filters(2) that can perform four-input binary classification on the Modified National Institute of Standards and Technology handwritten digit database. Implementation of our material-based filters substantially improves the classification accuracy over that of a linear classifier directly applied to the original data(13). Our results establish a paradigm of silicon-based electronics for smallfootprint and energy-efficient computation(14).


  
Large loss of CO2 in winter observed across the northern permafrost region (vol 9, pg 852, 2019) 期刊论文
NATURE CLIMATE CHANGE, 2019, 9 (12) : 1005-1005
作者:  Natali, Susan M.;  Watts, Jennifer D.;  Rogers, Brendan M.;  Potter, Stefano;  Ludwig, Sarah M.;  Selbmann, Anne-Katrin;  Sullivan, Patrick F.;  Abbott, Benjamin W.;  Arndt, Kyle A.;  Birch, Leah;  Bjorkman, Mats P.;  Bloom, A. Anthony;  Celis, Gerardo;  Christensen, Torben R.;  Christiansen, Casper T.;  Commane, Roisin;  Cooper, Elisabeth J.;  Crill, Patrick;  Czimczik, Claudia;  Davydov, Sergey;  Du, Jinyang;  Egan, Jocelyn E.;  Elberling, Bo;  Euskirchen, Eugenie S.;  Friborg, Thomas;  Genet, Helene
收藏  |  浏览/下载:10/0  |  提交时间:2020/02/16
Large loss of CO2 in winter observed across the northern permafrost region 期刊论文
NATURE CLIMATE CHANGE, 2019, 9 (11) : 852-+
作者:  Natali, Susan M.;  Watts, Jennifer D.;  Rogers, Brendan M.;  Potter, Stefano;  Ludwig, Sarah M.;  Selbmann, Anne-Katrin;  Sullivan, Patrick F.;  Abbott, Benjamin W.;  Arndt, Kyle A.;  Birch, Leah;  Bjorkman, Mats P.;  Bloom, A. Anthony;  Celis, Gerardo;  Christensen, Torben R.;  Christiansen, Casper T.;  Commane, Roisin;  Cooper, Elisabeth J.;  Crill, Patrick;  Czimczik, Claudia;  Davydov, Sergey;  Du, Jinyang;  Egan, Jocelyn E.;  Elberling, Bo;  Euskirchen, Eugenie S.;  Friborg, Thomas;  Genet, Helene;  Goeckede, Mathias;  Goodrich, Jordan P.;  Grogan, Paul;  Helbig, Manuel;  Jafarov, Elchin E.;  Jastrow, Julie D.;  Kalhori, Aram A. M.;  Kim, Yongwon;  Kimball, John S.;  Kutzbach, Lars;  Lara, Mark J.;  Larsen, Klaus S.;  Lee, Bang-Yong;  Liu, Zhihua;  Loranty, Michael M.;  Lund, Magnus;  Lupascu, Massimo;  Madani, Nima;  Malhotra, Avni;  Matamala, Roser;  McFarland, Jack;  McGuire, A. David;  Michelsen, Anders;  Minions, Christina;  Oechel, Walter C.;  Olefeldt, David;  Parmentier, Frans-Jan W.;  Pirk, Norbert;  Poulter, Ben;  Quinton, William;  Rezanezhad, Fereidoun;  Risk, David;  Sachs, Torsten;  Schaefer, Kevin;  Schmidt, Niels M.;  Schuur, Edward A. G.;  Semenchuk, Philipp R.;  Shaver, Gaius;  Sonnentag, Oliver;  Starr, Gregory;  Treat, Claire C.;  Waldrop, Mark P.;  Wang, Yihui;  Welker, Jeffrey;  Wille, Christian;  Xu, Xiaofeng;  Zhang, Zhen;  Zhuang, Qianlai;  Zona, Donatella
收藏  |  浏览/下载:18/0  |  提交时间:2019/11/27
Chromosome errors in human eggs shape natural fertility over reproductive life span 期刊论文
SCIENCE, 2019, 365 (6460) : 1466-+
作者:  Gruhn, Jennifer R.;  Zielinska, Agata P.;  Shukla, Vallari;  Blanshard, Robert;  Capalbo, Antonio;  Cimadomo, Danilo;  Nikiforov, Dmitry;  Chan, Andrew Chi-Ho;  Newnham, Louise J.;  Vogel, Ivan;  Scarica, Catello;  Krapchev, Marta;  Taylor, Deborah;  Kristensen, Stine Gry;  Cheng, Junping;  Ernst, Erik;  Bjorn, Anne-Mette Bay;  Colmorn, Lotte Berdiin;  Blayney, Martyn;  Elder, Kay;  Liss, Joanna;  Hartshorne, Geraldine;  Grondahl, Marie Louise;  Rienzi, Laura;  Ubaldi, Filippo;  McCoy, Rajiv;  Lukaszuk, Krzysztof;  Andersen, Claus Yding;  Schuh, Melina;  Hoffmann, Eva R.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
Nitrate addition stimulates microbial decomposition of organic matter in salt marsh sediments 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (10) : 3224-3241
作者:  Bulseco, Ashley N.;  Giblin, Anne E.;  Tucker, Jane;  Murphy, Anna E.;  Sanderman, Jonathan;  Hiller-Bittrolff, Kenly;  Bowen, Jennifer L.
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
16S rRNA gene  anaerobic respiration  decomposition  flow-through reactor  microbes  nitrate  organic matter  salt marsh  
Hagfish from the Cretaceous Tethys Sea and a reconciliation of the morphological-molecular conflict in early vertebrate phylogeny 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (6) : 2146-2151
作者:  Miyashita, Tetsuto;  Coates, Michael I.;  Farrar, Robert;  Larson, Peter;  Manning, Phillip L.;  Wogelius, Roy A.;  Edwards, Nicholas P.;  Anne, Jennifer;  Bergmann, Uwe;  Palmer, A. Richard;  Currie, Philip J.
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Myxinoidea  cyclostome  monophyly  synchrotron  soft tissue  
Time-dependent entrainment of smoke presents an observational challenge for assessing aerosol-cloud interactions over the southeast Atlantic Ocean 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (19) : 14623-14636
作者:  Diamond, Michael S.;  Dobracki, Anne;  Freitag, Steffen;  Griswold, Jennifer D. Small;  Heikkila, Ashley;  Howell, Steven G.;  Kacarab, Mary E.;  Podolske, James R.;  Saide, Pablo E.;  Wood, Robert
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
Palaeoclimate constraints on the impact of 2 degrees C anthropogenic warming and beyond (vol 11, pg 474, 2018) 期刊论文
NATURE GEOSCIENCE, 2018, 11 (8) : 615-615
作者:  Fischer, Hubertus;  Meissner, Katrin J.;  Mix, Alan C.;  Abram, Nerilie J.;  Austermann, Jacqueline;  Brovkin, Victor;  Capron, Emilie;  Colombaroli, Daniele;  Daniau, Anne-Laure;  Dyez, Kelsey A.;  Felis, Thomas;  Finkelstein, Sarah A.;  Jaccard, Samuel L.;  McClymont, Erin L.;  Rovere, Alessio;  Sutter, Johannes;  Wolff, Eric W.;  Affolter, Stephane;  Bakker, Pepijn;  Ballesteros-Canovas, Juan Antonio;  Barbante, Carlo;  Caley, Thibaut;  Carlson, Anders E.;  Churakova (Sidorova), Olga;  Cortese, Giuseppe;  Cumming, Brian F.;  Davis, Basil A. S.;  de Vernal, Anne;  Emile-Geay, Julien;  Fritz, Sherilyn C.;  Gierz, Paul;  Gottschalk, Julia;  Holloway, Max D.;  Joos, Fortunat;  Kucera, Michal;  Loutre, Marie-France;  Lunt, Daniel J.;  Marcisz, Katarzyna;  Marlon, Jennifer R.;  Martinez, Philippe;  Masson-Delmotte, Valerie;  Nehrbass-Ahles, Christoph;  Otto-Bliesner, Bette L.;  Raible, Christoph C.;  Risebrobakken, Bjorg;  Goni, Maria F. Sanchez;  Arrigo, Jennifer Saleem;  Sarnthein, Michael;  Sjolte, Jesper;  Stocker, Thomas F.;  Alvarez, Patricio A. Velasquez;  Tinner, Willy;  Valdes, Paul J.;  Vogel, Hendrik;  Wanner, Heinz;  Yan, Qing;  Yu, Zicheng;  Ziegler, Martin;  Zhou, Liping
收藏  |  浏览/下载:15/0  |  提交时间:2019/04/09