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Assessment of the importance of increasing temperature and decreasing soil moisture on global ecosystem productivity using solar-induced chlorophyll fluorescence 期刊论文
Global Change Biology, 2022
作者:  Chaoya Dang;  Zhenfeng Shao;  Xiao Huang;  Jiaxin Qian;  Gui Cheng;  Qing Ding;  Yewen Fan
收藏  |  浏览/下载:27/0  |  提交时间:2022/01/29
Proton-assisted growth of ultra-flat graphene films 期刊论文
NATURE, 2020, 577 (7789) : 204-+
作者:  Yuan, Guowen;  Lin, Dongjing;  Wang, Yong;  Huang, Xianlei;  Chen, Wang;  Xie, Xuedong;  Zong, Junyu;  Yuan, Qian-Qian;  Zheng, Hang;  Wang, Di;  Xu, Jie;  Li, Shao-Chun;  Zhang, Yi;  Sun, Jian;  Xi, Xiaoxiang;  Gao, Libo
收藏  |  浏览/下载:32/0  |  提交时间:2020/07/03

Graphene films grown by chemical vapour deposition have unusual physical and chemical properties that offer promise for applications such as flexible electronics and high-frequency transistors(1-10). However, wrinkles invariably form during growth because of the strong coupling to the substrate, and these limit the large-scale homogeneity of the film(1-4,11,12). Here we develop a proton-assisted method of chemical vapour deposition to grow ultra-flat graphene films that are wrinkle-free. Our method of proton penetration(13-17) and recombination to form hydrogen can also reduce the wrinkles formed during traditional chemical vapour deposition of graphene. Some of the wrinkles disappear entirely, owing to the decoupling of van der Waals interactions and possibly an increase in distance from the growth surface. The electronic band structure of the as-grown graphene films shows a V-shaped Dirac cone and a linear dispersion relation within the atomic plane or across an atomic step, confirming the decoupling from the substrate. The ultra-flat nature of the graphene films ensures that their surfaces are easy to clean after a wet transfer process. A robust quantum Hall effect appears even at room temperature in a device with a linewidth of 100 micrometres. Graphene films grown by proton-assisted chemical vapour deposition should largely retain their intrinsic performance, and our method should be easily generalizable to other nanomaterials for strain and doping engineering.


  
CRISPR screen in regulatory T cells reveals modulators of Foxp3 期刊论文
NATURE, 2020
作者:  Xu, Daqian;  Wang, Zheng;  Xia, Yan;  Shao, Fei;  Xia, Weiya;  Wei, Yongkun;  Li, Xinjian;  Qian, Xu;  Lee, Jong-Ho;  Du, Linyong;  Zheng, Yanhua;  Lv, Guishuai;  Leu, Jia-shiun;  Wang, Hongyang;  Xing, Dongming;  Liang, Tingbo;  Hung, Mien-Chie;  Lu, Zhimin
收藏  |  浏览/下载:51/0  |  提交时间:2020/07/03

Regulatory T (T-reg) cells are required to control immune responses and maintain homeostasis, but are a significant barrier to antitumour immunity(1). Conversely, T-reg instability, characterized by loss of the master transcription factor Foxp3 and acquisition of proinflammatory properties(2), can promote autoimmunity and/or facilitate more effective tumour immunity(3,4). A comprehensive understanding of the pathways that regulate Foxp3 could lead to more effective T-reg therapies for autoimmune disease and cancer. The availability of new functional genetic tools has enabled the possibility of systematic dissection of the gene regulatory programs that modulate Foxp3 expression. Here we developed a CRISPR-based pooled screening platform for phenotypes in primary mouse T-reg cells and applied this technology to perform a targeted loss-of-function screen of around 500 nuclear factors to identify gene regulatory programs that promote or disrupt Foxp3 expression. We identified several modulators of Foxp3 expression, including ubiquitin-specific peptidase 22 (Usp22) and ring finger protein 20 (Rnf20). Usp22, a member of the deubiquitination module of the SAGA chromatin-modifying complex, was revealed to be a positive regulator that stabilized Foxp3 expression  whereas the screen suggested that Rnf20, an E3 ubiquitin ligase, can serve as a negative regulator of Foxp3. T-reg-specific ablation of Usp22 in mice reduced Foxp3 protein levels and caused defects in their suppressive function that led to spontaneous autoimmunity but protected against tumour growth in multiple cancer models. Foxp3 destabilization in Usp22-deficient T-reg cells could be rescued by ablation of Rnf20, revealing a reciprocal ubiquitin switch in T-reg cells. These results reveal previously unknown modulators of Foxp3 and demonstrate a screening method that can be broadly applied to discover new targets for T-reg immunotherapies for cancer and autoimmune disease.


A CRISPR-based screening platform was used to identify previously uncharacterized genes that regulate the regulatory T cell-specific master transcription factor Foxp3, indicating that this screening method may be broadly applicable for the discovery of other genes involved in autoimmunity and immune responses to cancer.


  
Negative supercoil at gene boundaries modulates gene topology 期刊论文
NATURE, 2020, 577 (7792) : 701-+
作者:  Yuan, Guowen;  Lin, Dongjing;  Wang, Yong;  Huang, Xianlei;  Chen, Wang;  Xie, Xuedong;  Zong, Junyu;  Yuan, Qian-Qian;  Zheng, Hang;  Wang, Di;  Xu, Jie;  Li, Shao-Chun;  Zhang, Yi;  Sun, Jian;  Xi, Xiaoxiang;  Gao, Libo
收藏  |  浏览/下载:55/0  |  提交时间:2020/07/03

Transcription challenges the integrity of replicating chromosomes by generating topological stress and conflicts with forks(1,2). The DNA topoisomerases Top1 and Top2 and the HMGB family protein Hmo1 assist DNA replication and transcription(3-6). Here we describe the topological architecture of genes in Saccharomyces cerevisiae during the G1 and S phases of the cell cycle. We found under-wound DNA at gene boundaries and over-wound DNA within coding regions. This arrangement does not depend on Pol II or S phase. Top2 and Hmo1 preserve negative supercoil at gene boundaries, while Top1 acts at coding regions. Transcription generates RNA-DNA hybrids within coding regions, independently of fork orientation. During S phase, Hmo1 protects under-wound DNA from Top2, while Top2 confines Pol II and Top1 at coding units, counteracting transcription leakage and aberrant hybrids at gene boundaries. Negative supercoil at gene boundaries prevents supercoil diffusion and nucleosome repositioning at coding regions. DNA looping occurs at Top2 clusters. We propose that Hmo1 locks gene boundaries in a cruciform conformation and, with Top2, modulates the architecture of genes that retain the memory of the topological arrangements even when transcription is repressed.


  
Estimation of biogenic VOC emissions and their corresponding impact on ozone and secondary organic aerosol formation in China 期刊论文
ATMOSPHERIC RESEARCH, 2020, 231
作者:  Wu, Kai;  Yang, Xianyu;  Chen, Dean;  Gu, Shan;  Lu, Yaqiong;  Jiang, Qi;  Wang, Kun;  Ou, Yihan;  Qian, Yan;  Shao, Ping;  Lu, Shihua
收藏  |  浏览/下载:27/0  |  提交时间:2020/07/02
BVOC  Ozone  Modeling  MEGAN  SOA  
A 3-D Semianalytical Solution for Density-Driven Flow in Porous Media 期刊论文
WATER RESOURCES RESEARCH, 2018, 54 (12) : 10094-10116
作者:  Shao, Qian;  Fahs, Marwan;  Hoteit, Hussein;  Carrera, Jesus;  Ackerer, Philippe;  Younes, Anis
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
density-driven flow  3-D analytical solution  Rayleigh number  Fourier series solution  benchmarking  COMSOL Multiphysics  
Multidecadal anomalies of Bohai Sea ice cover and potential climate driving factors during 1988-2015 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2017, 12 (9)
作者:  Yan, Yu;  Shao, Dongdong;  Gu, Wei;  Liu, Chengyu;  Li, Qian;  Chao, Jinlong;  Tao, Jun;  Xu, Yingjun
收藏  |  浏览/下载:16/0  |  提交时间:2019/04/09
sea ice cover  anomalies  Bohai Sea  remote sensing  climate factors  seasonal cycle  
Formation of alpha-chiral centers by asymmetric beta-C(sp(3))-H arylation, alkenylation, and alkynylation 期刊论文
SCIENCE, 2017, 355 (6324) : 499-+
作者:  Wu, Qing-Feng;  Shen, Peng-Xiang;  He, Jian;  Wang, Xiao-Bing;  Zhang, Forrest;  Shao, Qian;  Zhu, Ru-Yi;  Mapelli, Claudio;  Qiao, Jennifer X.;  Poss, Michael A.;  Yu, Jin-Quan
收藏  |  浏览/下载:25/0  |  提交时间:2019/11/27