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Demographic composition, not demographic diversity, predicts biomass and turnover across temperate and tropical forests 期刊论文
Global Change Biology, 2022
作者:  Jessica F. Needham;  Daniel J. Johnson;  Kristina J. Anderson-Teixeira;  Norman Bourg;  Sarayudh Bunyavejchewin;  Nathalie Butt;  Min Cao;  Dairon Cá;  rdenas;  Chia-Hao Chang-Yang;  Yu-Yun Chen;  George Chuyong;  Handanakere S. Dattaraja;  Stuart J. Davies;  Alvaro Duque;  Corneille E. N. Ewango;  Edwino S. Fernando;  Rosie Fisher;  Christine D. Fletcher;  Robin Foster;  Zhanqing Hao;  Terese Hart;  Chang-Fu Hsieh;  Stephen P. Hubbell;  Akira Itoh;  David Kenfack;  Charles D. Koven;  Andrew J. Larson;  James A. Lutz;  William McShea;  Jean-Remy Makana;  Yadvinder Malhi;  Toby Marthews;  Mohizah Bt. Mohamad;  Michael D. Morecroft;  Natalia Norden;  Geoffrey Parker;  Ankur Shringi;  Raman Sukumar;  Hebbalalu S. Suresh;  I-Fang Sun;  Sylvester Tan;  Duncan W. Thomas;  Jill Thompson;  Maria Uriarte;  Renato Valencia;  Tze Leong Yao;  Sandra L. Yap;  Zuoqiang Yuan;  Hu Yuehua;  Jess K. Zimmerman;  Daniel Zuleta;  Sean M. McMahon
收藏  |  浏览/下载:17/0  |  提交时间:2022/02/23
COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data 期刊论文
Global Change Biology, 2020
作者:  Ben Bond‐;  Lamberty;  Danielle S. Christianson;  Avni Malhotra;  Stephanie C. Pennington;  Debjani Sihi;  Amir AghaKouchak;  Hassan Anjileli;  M. Altaf Arain;  Juan J. Armesto;  Samaneh Ashraf;  Mioko Ataka;  Dennis Baldocchi;  Thomas Andrew Black;  Nina Buchmann;  Mariah S. Carbone;  Shih‐;  Chieh Chang;  Patrick Crill;  Peter S. Curtis;  Eric A. Davidson;  Ankur R. Desai;  John E. Drake;  Tarek S. El‐;  Madany;  Michael Gavazzi;  Carolyn‐;  Monika Gö;  rres;  Christopher M. Gough;  Michael Goulden;  Jillian Gregg;  Omar Gutié;  rrez del Arroyo;  Jin‐;  Sheng He;  Takashi Hirano;  Anya Hopple;  Holly Hughes;  ;  rvi Jä;  rveoja;  Rachhpal Jassal;  Jinshi Jian;  Haiming Kan;  Jason Kaye;  Yuji Kominami;  Naishen Liang;  David Lipson;  Catriona A. Macdonald;  Kadmiel Maseyk;  Kayla Mathes;  Marguerite Mauritz;  Melanie A. Mayes;  Steve McNulty;  Guofang Miao;  Mirco Migliavacca;  Scott Miller;  Chelcy F. Miniat;  Jennifer G. Nietz;  Mats B. Nilsson;  Asko Noormets;  Hamidreza Norouzi;  Christine S. O’;  Connell;  Bruce Osborne;  Cecilio Oyonarte;  Zhuo Pang;  Matthias Peichl;  Elise Pendall;  Jorge F. Perez‐;  Quezada;  Claire L. Phillips;  Richard P. Phillips;  James W. Raich;  Alexandre A. Renchon;  Nadine K. Ruehr;  Enrique P. Sá;  nchez‐;  Cañ;  ete;  Matthew Saunders;  Kathleen E. Savage;  Marion Schrumpf;  Russell L. Scott;  Ulli Seibt;  Whendee L. Silver;  Wu Sun;  Daphne Szutu;  Kentaro Takagi;  Masahiro Takagi;  Munemasa Teramoto;  Mark G. Tjoelker;  Susan Trumbore;  Masahito Ueyama;  Rodrigo Vargas;  Ruth K. Varner;  Joseph Verfaillie;  Christoph Vogel;  Jinsong Wang;  Greg Winston;  Tana E. Wood;  Juying Wu;  Thomas Wutzler;  Jiye Zeng;  Tianshan Zha;  Quan Zhang;  Junliang Zou
收藏  |  浏览/下载:15/0  |  提交时间:2020/10/12
Mutations that prevent caspase cleavage of RIPK1 cause autoinflammatory disease 期刊论文
NATURE, 2020, 577 (7788) : 103-+
作者:  Lalaoui, Najoua;  Boyden, Steven E.;  Oda, Hirotsugu;  Wood, Geryl M.;  Stone, Deborah L.;  Chau, Diep;  Liu, Lin;  Stoffels, Monique;  Kratina, Tobias;  Lawlor, Kate E.;  Zaal, Kristien J. M.;  Hoffmann, Patrycja M.;  Etemadi, Nima;  Shield-Artin, Kristy;  Biben, Christine;  Tsai, Wanxia Li;  Blake, Mary D.;  Kuehn, Hye Sun;  Yang, Dan;  Anderton, Holly;  Silke, Natasha;  Wachsmuth, Laurens;  Zheng, Lixin;  Moura, Natalia Sampaio;  Beck, David B.;  Gutierrez-Cruz, Gustavo;  Ombrello, Amanda K.;  Pinto-Patarroyo, Gineth P.;  Kueh, Andrew J.;  Herold, Marco J.;  Hall, Cathrine;  Wang, Hongying;  Chae, Jae Jin;  Dmitrieva, Natalia I.;  McKenzie, Mark;  Light, Amanda;  Barham, Beverly K.;  Jones, Anne;  Romeo, Tina M.;  Zhou, Qing;  Aksentijevich, Ivona;  Mullikin, James C.;  Gross, Andrew J.;  Shum, Anthony K.;  Hawkins, Edwin D.;  Masters, Seth L.;  Lenardo, Michael J.;  Boehm, Manfred;  Rosenzweig, Sergio D.;  Pasparakis, Manolis;  Voss, Anne K.;  Gadina, Massimo;  Kastner, Daniel L.;  Silke, John
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/03

RIPK1 is a key regulator of innate immune signalling pathways. To ensure an optimal inflammatory response, RIPK1 is regulated post-translationally by well-characterized ubiquitylation and phosphorylation events, as well as by caspase-8-mediated cleavage1-7. The physiological relevance of this cleavage event remains unclear, although it is thought to inhibit activation of RIPK3 and necroptosis8. Here we show that the heterozygous missense mutations D324N, D324H and D324Y prevent caspase cleavage of RIPK1 in humans and result in an early-onset periodic fever syndrome and severe intermittent lymphadenopathy-a condition we term '  cleavage-resistant RIPK1-induced autoinflammatory syndrome'  . To define the mechanism for this disease, we generated a cleavage-resistant Ripk1(D325A) mutant mouse strain. Whereas Ripk1(-/-) mice died postnatally from systemic inflammation, Ripk1(D325A/D325A) mice died during embryogenesis. Embryonic lethality was completely prevented by the combined loss of Casp8 and Ripk3, but not by loss of Ripk3 or Mlkl alone. Loss of RIPK1 kinase activity also prevented Ripk1(D325A/D325A) embryonic lethality, although the mice died before weaning from multi-organ inflammation in a RIPK3-dependent manner. Consistently, Ripk1(D325A/D325A) and Ripk1(D325A/+) cells were hypersensitive to RIPK3-dependent TNF-induced apoptosis and necroptosis. Heterozygous Ripk1(D325A/+) mice were viable and grossly normal, but were hyper-responsive to inflammatory stimuli in vivo. Our results demonstrate the importance of caspase-mediated RIPK1 cleavage during embryonic development and show that caspase cleavage of RIPK1 not only inhibits necroptosis but also maintains inflammatory homeostasis throughout life.


  
A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds 期刊论文
NATURE, 2020, 580 (7803) : 409-+
作者:  Al-Shayeb, Basem;  Sachdeva, Rohan;  Chen, Lin-Xing;  Ward, Fred;  Munk, Patrick;  Devoto, Audra;  Castelle, Cindy J.;  Olm, Matthew R.;  Bouma-Gregson, Keith;  Amano, Yuki;  He, Christine;  Meheust, Raphael;  Brooks, Brandon;  Thomas, Alex;  Levy, Adi;  Matheus-Carnevali, Paula;  Sun, Christine;  Goltsman, Daniela S. A.;  Borton, Mikayla A.;  Sharrar, Allison;  Jaffe, Alexander L.;  Nelson, Tara C.;  Kantor, Rose;  Keren, Ray;  Lane, Katherine R.;  Farag, Ibrahim F.;  Lei, Shufei;  Finstad, Kari;  Amundson, Ronald;  Anantharaman, Karthik;  Zhou, Jinglie;  Probst, Alexander J.;  Power, Mary E.;  Tringe, Susannah G.;  Li, Wen-Jun;  Wrighton, Kelly;  Harrison, Sue;  Morowitz, Michael;  Relman, David A.;  Doudna, Jennifer A.;  Lehours, Anne-Catherine;  Warren, Lesley;  Cate, Jamie H. D.;  Santini, Joanne M.;  Banfield, Jillian F.
收藏  |  浏览/下载:37/0  |  提交时间:2020/07/03

Mycobacterium tuberculosis (Mtb) is an obligate human pathogen and the causative agent of tuberculosis(1-3). Although Mtb can synthesize vitamin B-12 (cobalamin) de novo, uptake of cobalamin has been linked to pathogenesis of tuberculosis2. Mtb does not encode any characterized cobalamin transporter(4-6)  however, the gene rv1819c was found to be essential for uptake of cobalamin(1). This result is difficult to reconcile with the original annotation of Rv1819c as a protein implicated in the transport of antimicrobial peptides such as bleomycin(7). In addition, uptake of cobalamin seems inconsistent with the amino acid sequence, which suggests that Rv1819c has a bacterial ATP-binding cassette (ABC)-exporter fold1. Here, we present structures of Rv1819c, which reveal that the protein indeed contains the ABC-exporter fold, as well as a large water-filled cavity of about 7,700 angstrom(3), which enables the protein to transport the unrelated hydrophilic compounds bleomycin and cobalamin. On the basis of these structures, we propose that Rv1819c is a multi-solute transporter for hydrophilic molecules, analogous to the multidrug exporters of the ABC transporter family, which pump out structurally diverse hydrophobic compounds from cells(8-11).


  
Temporal population variability in local forest communities has mixed effects on tree species richness across a latitudinal gradient 期刊论文
ECOLOGY LETTERS, 2019
作者:  Fung, Tak;  Chisholm, Ryan A.;  Anderson-Teixeira, Kristina;  Bourg, Norm;  Brockelman, Warren Y.;  Bunyavejchewin, Sarayudh;  Chang-Yang, Chia-Hao;  Chitra-Tarak, Rutuja;  Chuyong, George;  Condit, Richard;  Dattaraja, Handanakere S.;  Davies, Stuart J.;  Ewango, Corneille E. N.;  Fewless, Gary;  Fletcher, Christine;  Gunatilleke, C. V. Savitri;  Gunatilleke, I. A. U. Nimal;  Hao, Zhanqing;  Hogan, J. Aaron;  Howe, Robert;  Hsieh, Chang-Fu;  Kenfack, David;  Lin, YiChing;  Ma, Keping;  Makana, Jean-Remy;  McMahon, Sean;  McShea, William J.;  Mi, Xiangcheng;  Nathalang, Anuttara;  Ong, Perry S.;  Parker, Geoffrey;  Rau, E-Ping;  Shue, Jessica;  Su, Sheng-Hsin;  Sukumar, Raman;  Sun, I-Fang;  Suresh, Hebbalalu S.;  Tan, Sylvester;  Thomas, Duncan;  Thompson, Jill;  Valencia, Renato;  Vallejo, Martha I.;  Wang, Xugao;  Wang, Yunquan;  Wijekoon, Pushpa;  Wolf, Amy;  Yap, Sandra;  Zimmerman, Jess
收藏  |  浏览/下载:14/0  |  提交时间:2020/02/17
Biodiversity  environmental variance  extinction risk  stochastic model  storage effect  temporal niche partitioning  
HSP90-incorporating chaperome networks as biosensor for disease-related pathways in patient-specific midbrain dopamine neurons 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Kishinevsky, Sarah;  Wang, Tai;  Rodina, Anna;  Chung, Sun Young;  Xu, Chao;  Philip, John;  Taldone, Tony;  Joshi, Suhasini;  Alpaugh, Mary L.;  Bolaender, Alexander;  Gutbier, Simon;  Sandhu, Davinder;  Fattahi, Faranak;  Zimmer, Bastian;  Shah, Smit K.;  Chang, Elizabeth;  Inda, Carmen;  Koren, John, III;  Saurat, Nathalie G.;  Leist, Marcel;  Gross, Steven S.;  Seshan, Venkatraman E.;  Klein, Christine;  Tomishima, Mark J.;  Erdjument-Bromage, Hediye;  Neubert, Thomas A.;  Henrickson, Ronald C.;  Chiosis, Gabriela;  Studer, Lorenz
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27