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Coupling delay controls synchronized oscillation in the segmentation clock 期刊论文
NATURE, 2020
作者:  Yoshioka-Kobayashi, Kumiko;  Matsumiya, Marina;  Niino, Yusuke;  Isomura, Akihiro;  Kori, Hiroshi;  Miyawaki, Atsushi;  Kageyama, Ryoichiro
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

Individual cellular activities fluctuate but are constantly coordinated at the population level via cell-cell coupling. A notable example is the somite segmentation clock, in which the expression of clock genes (such as Hes7) oscillates in synchrony between the cells that comprise the presomitic mesoderm (PSM)(1,2). This synchronization depends on the Notch signalling pathway  inhibiting this pathway desynchronizes oscillations, leading to somite fusion(3-7). However, how Notch signalling regulates the synchronicity of HES7 oscillations is unknown. Here we establish a live-imaging system using a new fluorescent reporter (Achilles), which we fuse with HES7 to monitor synchronous oscillations in HES7 expression in the mouse PSM at a single-cell resolution. Wild-type cells can rapidly correct for phase fluctuations in HES7 oscillations, whereas the absence of the Notch modulator gene lunatic fringe (Lfng) leads to a loss of synchrony between PSM cells. Furthermore, HES7 oscillations are severely dampened in individual cells of Lfng-null PSM. However, when Lfng-null PSM cells were completely dissociated, the amplitude and periodicity of HES7 oscillations were almost normal, which suggests that LFNG is involved mostly in cell-cell coupling. Mixed cultures of control and Lfng-null PSM cells, and an optogenetic Notch signalling reporter assay, revealed that LFNG delays the signal-sending process of intercellular Notch signalling transmission. These results-together with mathematical modelling-raised the possibility that Lfng-null PSM cells shorten the coupling delay, thereby approaching a condition known as the oscillation or amplitude death of coupled oscillators(8). Indeed, a small compound that lengthens the coupling delay partially rescues the amplitude and synchrony of HES7 oscillations in Lfng-null PSM cells. Our study reveals a delay control mechanism of the oscillatory networks involved in somite segmentation, and indicates that intercellular coupling with the correct delay is essential for synchronized oscillation.


Monitoring cells of the mouse presomitic mesoderm using the Achilles reporter fused to HES7 sheds light on the mechanisms that underpin synchronous oscillations in the expression of clock genes between neighbouring cells.


  
Aseismic transient slip on the Gofar transform fault, East Pacific Rise 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (19) : 10188-10194
作者:  Liu, Yajing;  McGuire, Jeffrey J.;  Behn, Mark D.
收藏  |  浏览/下载:19/0  |  提交时间:2020/05/13
oceanic transform faults  earthquake rupture segmentation  aseismic transients  seismic swarms  
Digital Rock Segmentation for Petrophysical Analysis With Reduced User Bias Using Convolutional Neural Networks 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (2)
作者:  Niu, Yufu;  Mostaghimi, Peyman;  Shabaninejad, Mehdi;  Swietojanski, Pawel;  Armstrong, Ryan T.
收藏  |  浏览/下载:37/0  |  提交时间:2020/07/02
convolutional neural network  digital rock  image segmentation  X-ray microcomputed tomography  
Consumers in a Circular Economy: Economic Analysis of Household Waste Sorting Behaviour 期刊论文
ECOLOGICAL ECONOMICS, 2019, 166
作者:  Nainggolan, Doan;  Pedersen, Anders Branth;  Smed, Sinne;  Zemo, Kahsay Haile;  Hasler, Berit;  Termansen, Mette
收藏  |  浏览/下载:18/0  |  提交时间:2020/02/17
Circular economy  Waste sorting  Recycling  Discrete choice experiment  Choice model  Household preference  Survey  Segmentation  Latent class model  
Data Mining to Uncover Heterogeneous Water Use Behaviors From Smart Meter Data 期刊论文
WATER RESOURCES RESEARCH, 2019
作者:  Cominola, A.;  Nguyen, K.;  Giuliani, M.;  Stewart, R. A.;  Maier, H. R.;  Castelletti, A.
收藏  |  浏览/下载:16/0  |  提交时间:2020/02/16
water demand management  water end uses  segmentation analysis  data mining  water use behaviors  smart meters  
Integration of WorldView-2 and airborne laser scanning data to classify defoliation levels in Quercus ilex L. Dehesas affected by root rot mortality: Management implications 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 451
作者:  Navarro-Cerrillo, Rafael M.;  Varo-Martinez, Ma Angeles;  Acosta, Cristina;  Palacios Rodriguez, Guillermo;  Sanchez-Cuesta, Rafael;  Gomez, Francisco J. Ruiz
收藏  |  浏览/下载:25/0  |  提交时间:2019/11/27
Dehesas forest type  Holm oak decline  Defoliation  Predictor remote sensing datasets  Segmentation  Random forest  
Beauty and the budget: A segmentation of residential solar adopters 期刊论文
ECOLOGICAL ECONOMICS, 2019, 164
作者:  Petrovich, Beatrice;  Hille, Stefanie Lena;  Wustenhagen, Rolf
收藏  |  浏览/下载:26/0  |  提交时间:2019/11/27
Solar panels  Residential solar energy  Consumer segmentation  Choice experiment  Building integrated photovoltaics  Peer effects  
Market segmentation and wind curtailment: An empirical analysis 期刊论文
ENERGY POLICY, 2019, 132: 831-838
作者:  Song, Feng;  Bi, De;  Wei, Chu
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Wind curtailment  Market segmentation  Electricity market  China  
Who can drive electric? Segmentation of car drivers based on longitudinal GPS travel data 期刊论文
ENERGY POLICY, 2019, 130: 111-129
作者:  Sodenkamp, Mariya;  Wenig, Juergen;  Thiesse, Frederic;  Staake, Thorsten
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Electric mobility  Driver segmentation  Vehicle charging  Energy demand  GPS data analytics  
What do Canadians think about economic growth, prosperity and the environment? 期刊论文
ECOLOGICAL ECONOMICS, 2019, 161: 41-49
作者:  Tomaselli, Maria Fernanda;  Sheppard, Stephen R. J.;  Kozak, Robert;  Gifford, Robert
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27
Economic growth  Sustainability  Limits to growth  Public opinion  Audience segmentation