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Leverage points for sustainability transformation: a review on interventions in food and energy systems 期刊论文
ECOLOGICAL ECONOMICS, 2020, 171
作者:  Dorninger, Christian;  Abson, David J.;  Apetrei, Cristina I.;  Derwort, Pim;  Ives, Christopher D.;  Klaniecki, Kathleen;  Lam, David P. M.;  Langsenlehne, Maria;  Riechers, Maraja;  Spittler, Nathalie;  von Wehrden, Henrik
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
Energy system  Food system  Leverage points  Sustainability interventions  Sustainability transformation  
HBO1 is required for the maintenance of leukaemia stem cells 期刊论文
NATURE, 2020, 577 (7789) : 266-+
作者:  MacPherson, Laura;  Anokye, Juliana;  Yeung, Miriam M.;  Lam, Enid Y. N.;  Chan, Yih-Chih;  Weng, Chen-Fang;  Yeh, Paul;  Knezevic, Kathy;  Butler, Miriam S.;  Hoegl, Annabelle;  Chan, Kah-Lok;  Burr, Marian L.;  Gearing, Linden J.;  Willson, Tracy;  Liu, Joy;  Choi, Jarny;  Yang, Yuqing;  Bilardi, Rebecca A.;  Falk, Hendrik;  Nghi Nguyen;  Stupple, Paul A.;  Peat, Thomas S.;  Zhang, Ming;  de Silva, Melanie;  Carrasco-Pozo, Catalina;  Avery, Vicky M.;  Khoo, Poh Sim;  Dolezal, Olan;  Dennis, Matthew L.;  Nuttall, Stewart;  Surjadi, Regina;  Newman, Janet;  Ren, Bin;  Leaver, David J.;  Sun, Yuxin;  Baell, Jonathan B.;  Dovey, Oliver;  Vassiliou, George S.;  Grebien, Florian;  Dawson, Sarah-Jane;  Street, Ian P.;  Monahan, Brendon J.;  Burns, Christopher J.;  Choudhary, Chunaram;  Blewitt, Marnie E.;  Voss, Anne K.;  Thomas, Tim;  Dawson, Mark A.
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

Acute myeloid leukaemia (AML) is a heterogeneous disease characterized by transcriptional dysregulation that results in a block in differentiation and increased malignant self-renewal. Various epigenetic therapies aimed at reversing these hallmarks of AML have progressed into clinical trials, but most show only modest efficacy owing to an inability to effectively eradicate leukaemia stem cells (LSCs)(1). Here, to specifically identify novel dependencies in LSCs, we screened a bespoke library of small hairpin RNAs that target chromatin regulators in a unique ex vivo mouse model of LSCs. We identify the MYST acetyltransferase HBO1 (also known as KAT7 or MYST2) and several known members of the HBO1 protein complex as critical regulators of LSC maintenance. Using CRISPR domain screening and quantitative mass spectrometry, we identified the histone acetyltransferase domain of HBO1 as being essential in the acetylation of histone H3 at K14. H3 acetylated at K14 (H3K14ac) facilitates the processivity of RNA polymerase II to maintain the high expression of key genes (including Hoxa9 and Hoxa10) that help to sustain the functional properties of LSCs. To leverage this dependency therapeutically, we developed a highly potent small-molecule inhibitor of HBO1 and demonstrate its mode of activity as a competitive analogue of acetyl-CoA. Inhibition of HBO1 phenocopied our genetic data and showed efficacy in a broad range of human cell lines and primary AML cells from patients. These biological, structural and chemical insights into a therapeutic target in AML will enable the clinical translation of these findings.


  
Multiresolution Approach to Condition Categorical Multiple-Point Realizations to Dynamic Data With Iterative Ensemble Smoothing 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (2)
作者:  Lam, D. -T.;  Renard, P.;  Straubhaar, J.;  Kerrou, J.
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/02
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.


  
Signatures of self-organized criticality in an ultracold atomic gas 期刊论文
NATURE, 2020, 577 (7791) : 481-+
作者:  MacPherson, Laura;  Anokye, Juliana;  Yeung, Miriam M.;  Lam, Enid Y. N.;  Chan, Yih-Chih;  Weng, Chen-Fang;  Yeh, Paul;  Knezevic, Kathy;  Butler, Miriam S.;  Hoegl, Annabelle;  Chan, Kah-Lok;  Burr, Marian L.;  Gearing, Linden J.;  Willson, Tracy;  Liu, Joy;  Choi, Jarny;  Yang, Yuqing;  Bilardi, Rebecca A.;  Falk, Hendrik;  Nghi Nguyen;  Stupple, Paul A.;  Peat, Thomas S.;  Zhang, Ming;  De Silva, Melanie;  Carrasco-Pozo, Catalina;  Avery, Vicky M.;  Khoo, Sim;  Dolezal, Olan;  Dennis, Matthew L.;  Nuttall, Stewart;  Surjadi, Regina;  Newman, Janet;  Ren, Bin;  Leaver, David J.;  Sun, Yuxin;  Baell, Jonathan B.;  Dovey, Oliver;  Vassiliou, George S.;  Grebien, Florian;  Dawson, Sarah-Jane;  Street, Ian P.;  Monahan, Brendon J.;  Burns, Christopher J.;  Choudhary, Chunaram;  Blewitt, Marnie E.;  Voss, Anne K.;  Thomas, Tim;  Dawson, Mark A.
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/03

Self-organized criticality is an elegant explanation of how complex structures emerge and persist throughout nature(1), and why such structures often exhibit similar scale-invariant properties(2-9). Although self-organized criticality is sometimes captured by simple models that feature a critical point as an attractor for the dynamics(10-15), the connection to real-world systems is exceptionally hard to test quantitatively(16-21). Here we observe three key signatures of self-organized criticality in the dynamics of a driven-dissipative gas of ultracold potassium atoms: self-organization to a stationary state that is largely independent of the initial conditions  scale-invariance of the final density characterized by a unique scaling function  and large fluctuations of the number of excited atoms (avalanches) obeying a characteristic power-law distribution. This work establishes a well-controlled platform for investigating self-organization phenomena and non-equilibrium criticality, with experimental access to the underlying microscopic details of the system.


A driven-dissipative gas of ultracold potassium atoms is used to demonstrate three key signatures of self-organized criticality, and provides a system in which the phenomenon can be experimentally tested.


  
Climate-carbon cycle uncertainties and the Paris Agreement (vol 8, pg 609, 2018) 期刊论文
NATURE CLIMATE CHANGE, 2018, 8 (10) : 921-921
作者:  Holden, P. B.;  Edwards, N. R.;  Ridgwell, A.;  Wilkinson, R. D.;  Fraedrich, K.;  Lunkeit, F.;  Pollitt, H.;  Mercure, J. -F.;  Salas, P.;  Lam, A.;  Knobloch, F.;  Chewpreecha, U.;  Vinuales, J. E.
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Macroeconomic impact of stranded fossil fuel assets 期刊论文
NATURE CLIMATE CHANGE, 2018, 8 (7) : 588-+
作者:  Mercure, J. -F.;  Pollitt, H.;  Vinuales, J. E.;  Edwards, N. R.;  Holden, P. B.;  Chewpreecha, U.;  Salas, P.;  Sognnaes, I.;  Lam, A.;  Knobloch, F.
收藏  |  浏览/下载:2/0  |  提交时间:2019/04/09
Climate-carbon cycle uncertainties and the Paris Agreement 期刊论文
NATURE CLIMATE CHANGE, 2018, 8 (7) : 609-+
作者:  Holden, P. B.;  Edwards, N. R.;  Ridgwell, A.;  Wilkinson, R. D.;  Fraedrich, K.;  Lunkeit, F.;  Pollitt, H.;  Mercure, J. -F.;  Salas, P.;  Lam, A.;  Knobloch, F.;  Chewpreecha, U.;  Vinuales, J. E.
收藏  |  浏览/下载:3/0  |  提交时间:2019/04/09
High-resolution comparative analysis of great ape genomes 期刊论文
SCIENCE, 2018, 360 (6393) : 1085-+
作者:  Kronenberg, Zev N.;  Fiddes, Ian T.;  Gordon, David;  Murali, Shwetha;  Cantsilieris, Stuart;  Meyerson, Olivia S.;  Underwood, Jason G.;  Nelson, Bradley J.;  Chaisson, Mark J. P.;  Dougherty, Max L.;  Munson, Katherine M.;  Hastie, Alex R.;  Diekhans, Mark;  Hormozdiari, Fereydoun;  Lorusso, Nicola;  Hoekzema, Kendra;  Qiu, Ruolan;  Clark, Karen;  Raja, Archana;  Welch, AnneMarie E.;  Sorensen, Melanie;  Baker, Carl;  Fulton, Robert S.;  Armstrong, Joel;  Graves-Lindsay, Tina A.;  Denli, Ahmet M.;  Hoppe, Emma R.;  Hsieh, PingHsun;  Hill, Christopher M.;  Pang, Andy Wing Chun;  Lee, Joyce;  Lam, Ernest T.;  Dutcher, Susan K.;  Gage, Fred H.;  Warren, Wesley C.;  Shendure, Jay;  Haussler, David;  Schneider, Valerie A.;  Cao, Han;  Ventura, Mario;  Wilson, Richard K.;  Paten, Benedict;  Pollen, Alex;  Eichler, Evan E.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
Developmental PBDE Exposure and IQ/ADHD in Childhood: A Systematic Review and Meta-analysis 期刊论文
ENVIRONMENTAL HEALTH PERSPECTIVES, 2017, 125 (8)
作者:  Lam, Juleen;  Lanphear, Bruce P.;  Bellinger, David;  Axelrad, Daniel A.;  McPartland, Jennifer;  Sutton, Patrice;  Davidson, Lisette;  Daniels, Natalyn;  Sen, Saunak;  Woodruff, Tracey J.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09